genome.fa.s203.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold203
Parameters: 2 7 7 80 10 50 1000
Length:  651529

Tables:   1   2   3   

This is table  2  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169890--169951	27	2.3	27	91	2	99	0	1	9	88	0.58
169890--169951	26	2.3	27	88	5	90	0	1	9	88	0.58
182484--182602	51	2.3	51	84	5	168	30	13	27	28	1.94
182306--182630	130	2.5	127	79	8	336	32	13	26	28	1.94
182572--182668	28	3.2	29	84	11	117	28	15	28	26	1.96
182652--182862	51	4.1	51	90	2	280	32	11	25	30	1.92
182794--183096	79	3.9	79	89	3	443	29	14	28	27	1.95
183032--183208	51	3.5	49	81	8	187	34	11	25	28	1.90
185588--185629	21	2.0	21	90	0	66	28	19	9	42	1.82
185654--185739	19	4.7	19	71	20	67	34	15	13	36	1.87
185646--185719	32	2.3	32	95	0	130	35	16	13	35	1.88
185673--185697	13	1.9	13	100	0	50	32	16	16	36	1.90
192755--192903	52	2.9	51	89	4	235	30	17	18	32	1.94
192892--192916	13	1.9	13	100	0	50	36	16	16	32	1.90
192957--193023	33	2.0	33	85	0	89	41	14	10	32	1.80
192979--193003	13	1.9	13	100	0	50	32	16	16	36	1.90
196490--196544	11	5.0	11	74	12	51	1	27	1	69	1.09
198438--198496	21	2.8	21	89	0	91	37	15	10	37	1.81
198780--198861	41	2.0	41	85	0	110	43	15	25	14	1.85
198893--199503	82	7.5	82	74	6	342	42	15	23	18	1.88
198904--199503	41	14.7	41	69	8	229	42	15	23	18	1.89
200078--200124	21	2.3	20	82	10	60	17	4	14	63	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201763--201829	7	8.2	8	78	15	59	74	8	0	16	1.05
201763--201829	15	4.7	15	74	10	68	74	8	0	16	1.05
201804--201847	14	3.2	13	84	12	52	75	6	0	18	1.02
201874--202038	88	1.9	88	94	0	294	27	20	11	41	1.86
207356--207712	178	2.0	178	98	0	687	26	21	23	28	1.99
214820--214844	13	1.9	13	100	0	50	64	4	8	24	1.38
215059--215706	32	20.2	32	85	5	853	30	32	16	20	1.95
215782--216354	49	11.6	49	78	11	544	26	26	15	31	1.96
215782--216348	100	5.7	101	84	6	691	26	26	15	31	1.96
216262--216348	43	2.0	43	88	0	129	26	26	17	29	1.97
219579--219629	26	1.9	27	84	4	68	29	23	17	29	1.97
221495--221548	26	2.1	26	100	0	108	29	12	22	35	1.91
227265--227316	21	2.7	20	82	14	56	40	1	0	57	1.10
227824--227856	3	11.0	3	100	0	66	66	0	0	33	0.92
232422--232461	21	2.0	21	85	9	57	30	5	2	62	1.29
232950--232978	2	14.5	2	100	0	58	0	48	0	51	1.00
233064--233113	21	2.4	21	96	0	91	28	8	4	60	1.43
233243--233277	14	2.4	14	90	4	52	28	0	5	65	1.15
233293--233342	16	2.9	17	85	8	66	40	4	2	54	1.31
233653--233699	14	3.5	13	81	13	60	44	0	2	53	1.12
234434--234458	8	3.1	8	100	0	50	36	0	0	64	0.94
235798--235845	16	3.2	16	77	17	66	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240885--240953	33	2.0	33	86	5	93	52	0	1	46	1.09
240911--240953	16	2.6	17	77	3	52	58	0	2	39	1.11
242212--242245	2	17.0	2	100	0	68	50	0	0	50	1.00
243639--243681	19	2.3	19	100	0	86	55	13	4	25	1.58
247049--247117	17	3.9	18	80	19	74	56	1	0	42	1.08
250556--250581	13	2.0	13	100	0	52	38	15	15	30	1.88
250631--250683	20	2.6	21	87	3	81	28	16	13	41	1.86
250671--250695	13	1.9	13	100	0	50	36	16	16	32	1.90
251281--251306	13	2.0	13	100	0	52	38	15	15	30	1.88
251259--251326	33	2.1	33	88	2	102	32	14	19	33	1.92
251399--251423	13	1.9	13	100	0	50	36	16	16	32	1.90
254741--254790	17	2.9	18	80	20	70	44	0	0	56	0.99
258178--258221	20	2.2	20	96	4	81	27	4	13	54	1.58
409781--409837	28	2.0	28	96	0	105	36	15	14	33	1.88
415226--415611	155	2.5	155	77	3	418	23	15	21	40	1.91
416348--416373	13	2.0	13	100	0	52	30	15	15	38	1.88
418851--419595	79	9.4	79	93	0	1229	27	25	14	32	1.95
419527--419646	51	2.4	51	98	0	231	28	25	14	32	1.94
419448--419725	130	2.1	130	95	0	502	28	24	14	33	1.94
419369--419850	209	2.3	211	88	2	684	27	24	13	34	1.93
419582--419807	79	2.8	79	85	3	292	28	25	11	34	1.91
433275--433433	57	2.7	58	83	8	196	23	29	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433521--433611	28	3.2	28	65	17	78	25	25	19	29	1.99
433435--433810	60	6.5	59	85	8	479	26	28	20	25	1.99
433439--434084	154	3.8	170	76	18	608	25	28	20	25	1.99
433824--434084	61	4.4	57	78	10	206	25	27	20	25	1.99
433824--433907	25	3.2	25	64	18	62	27	32	21	19	1.97
433851--434083	61	3.8	61	82	8	271	25	27	20	26	1.99
433854--434083	122	1.9	121	85	4	320	26	27	20	25	1.99
434750--434778	12	2.3	13	94	5	51	68	3	0	27	1.05
436224--437046	79	10.4	79	91	1	1249	27	24	13	33	1.94
439300--439768	166	2.8	165	82	8	533	25	10	8	55	1.63
439739--439799	31	2.0	31	93	6	106	39	8	0	52	1.31
439576--439965	197	2.0	198	85	4	538	28	11	7	52	1.63
439781--440178	168	2.4	165	82	7	464	28	10	9	51	1.66
439416--440108	363	1.9	364	87	3	1031	26	10	8	53	1.65
439792--440271	168	2.9	168	79	8	382	28	11	10	49	1.71
440827--440864	2	19.5	2	91	5	60	55	0	44	0	0.99
442600--442888	155	1.9	154	84	2	380	22	14	23	39	1.91
454728--455253	153	3.4	156	68	16	394	31	17	14	36	1.90
454560--455026	153	3.0	152	71	14	416	31	16	15	36	1.90
454559--455213	310	2.1	309	85	4	871	30	16	15	37	1.90
458134--458160	13	2.1	13	100	0	54	29	14	14	40	1.86
458144--458200	19	2.9	20	79	10	73	31	14	15	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458116--458181	32	2.0	33	85	8	91	27	15	16	40	1.88
458141--458282	20	7.0	20	66	16	78	32	16	16	34	1.92
461213--461283	20	3.6	19	88	3	88	26	12	16	43	1.84
461213--461270	20	2.9	20	92	5	91	24	13	17	44	1.85
463628--463788	79	2.1	78	80	3	180	29	22	14	33	1.94
463881--463955	28	2.7	27	78	15	82	22	30	21	25	1.99
463940--464054	50	2.3	51	86	1	151	30	27	13	28	1.94
463992--464210	79	2.8	79	83	2	262	28	24	14	32	1.94
468836--468874	21	1.9	21	89	5	62	33	17	0	48	1.48
471171--471243	20	3.7	19	85	8	85	28	15	17	38	1.90
474731--476788	159	13.0	154	65	14	451	36	15	18	29	1.91
473346--478549	476	11.0	476	86	2	6788	36	15	18	30	1.91
478322--478794	246	1.9	245	89	0	730	38	15	17	28	1.91
477848--479266	720	2.0	719	86	2	1970	37	14	18	29	1.91
478568--480209	475	3.5	475	83	3	2021	36	14	17	30	1.91
479879--480542	333	2.0	333	84	1	857	37	15	17	28	1.91
480212--509560	951	31.2	915	81	8	25039	36	15	18	29	1.92
482013--485661	474	7.7	474	75	11	2370	35	16	18	29	1.93
482013--483265	475	2.6	475	90	0	1907	35	16	18	30	1.92
483290--483653	61	6.0	60	76	4	176	32	19	22	25	1.98
483380--483732	123	2.8	125	77	9	353	33	19	21	24	1.97
483286--483750	62	7.6	61	77	5	357	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483774--484485	158	4.5	158	66	11	407	36	16	16	30	1.91
483762--485664	474	4.0	473	89	2	2752	36	15	17	29	1.91
486118--496731	159	67.2	158	63	14	869	36	15	18	29	1.92
485662--497066	476	24.1	475	86	2	14459	36	15	18	29	1.92
497086--498927	476	3.9	477	91	0	3021	36	16	17	29	1.92
498937--506503	475	16.0	476	86	3	9817	36	15	18	29	1.92
499289--501377	158	13.2	156	63	14	493	36	16	18	29	1.93
498937--506503	942	8.0	947	89	2	9917	36	15	18	29	1.92
506500--509560	475	6.4	475	87	1	3973	36	15	18	30	1.91
509560--512496	476	6.2	475	87	2	3878	36	15	17	30	1.91

Tables:   1   2   3