genome.fa.s203.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold203
Parameters: 2 7 7 80 10 50 1000
Length:  651529

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509560--512496	951	3.1	948	87	1	4077	36	15	17	30	1.91
512198--512809	312	2.0	311	87	2	890	38	14	18	28	1.90
512509--519716	476	15.2	475	85	2	8816	36	14	17	30	1.90
512509--519716	953	7.6	952	85	3	8910	36	14	17	30	1.90
517260--517950	160	4.3	159	68	11	410	36	14	17	32	1.90
524700--524776	12	6.9	12	68	24	53	11	44	1	42	1.49
524666--524785	42	2.9	42	87	0	168	10	41	1	45	1.49
526392--533210	477	14.3	478	85	2	8133	36	14	17	31	1.90
534820--534938	42	2.8	41	86	5	157	42	3	45	9	1.52
539659--542495	476	6.0	476	83	3	3415	36	14	17	30	1.90
542524--542555	16	2.0	16	100	0	64	25	31	18	25	1.98
542540--549114	476	13.9	476	86	2	8732	30	18	14	36	1.91
544121--549114	947	5.3	946	85	3	6616	30	18	14	36	1.91
549808--550432	159	3.9	157	66	11	374	29	17	15	37	1.91
549814--551298	476	3.1	475	89	1	2203	30	18	15	36	1.92
552038--552153	42	2.8	42	91	0	178	9	43	3	43	1.53
552050--552120	18	3.6	18	69	20	52	9	43	2	43	1.52
553763--555858	475	4.4	475	86	1	2923	31	18	14	35	1.91
555869--555908	20	2.0	20	100	0	80	40	15	15	30	1.87
555578--556178	311	1.9	311	100	0	1202	33	19	14	32	1.92
555893--565725	475	21.1	459	86	4	12408	31	18	14	35	1.91
555893--565725	934	10.5	934	88	3	13386	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565525--565977	252	1.8	251	86	2	667	30	16	15	37	1.90
565761--566835	477	2.3	475	86	2	1548	30	18	14	36	1.91
565761--566835	476	2.3	476	87	1	1557	30	18	14	36	1.91
566750--566917	82	2.0	82	90	2	266	36	14	14	34	1.87
566275--567374	555	2.0	557	87	2	1593	31	18	14	36	1.91
566832--568198	476	2.9	473	85	2	1884	30	18	14	36	1.91
568817--570998	474	4.6	475	84	1	2675	30	18	14	36	1.91
570747--571314	291	2.0	290	82	4	707	30	17	14	37	1.90
570287--571789	766	2.0	765	85	2	2041	30	19	14	36	1.91
571026--575364	949	4.6	947	86	2	5974	30	18	14	35	1.91
571026--575364	475	9.2	475	87	1	5985	30	18	14	35	1.91
577010--577059	18	2.7	19	79	11	52	46	4	44	6	1.47
581830--646434	476	136.1	476	82	6	43428	30	18	14	35	1.92
600537--600946	211	1.9	211	88	4	623	31	20	14	32	1.93
619557--619967	212	1.9	211	89	4	632	31	20	14	32	1.93
646432--651528	970	5.3	952	78	13	4169	33	16	18	30	1.94

Tables:   1   2   3

The End!