Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2031
Parameters: 2 7 7 80 10 50 1000
Length:  365977

Tables:   1   2   3   

This is table  3  of  3  ( 270 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
321666--321963
28
10.5
29
77
9
260
21
16
29
32
1.95
321712--321960
28
8.8
29
82
4
274
21
17
29
31
1.96
321703--321960
57
4.6
56
82
7
299
21
16
29
32
1.95
323400--323494
1
95.0
1
68
0
55
0
10
5
84
0.77
323400--323469
11
6.8
10
81
15
72
0
7
7
85
0.73
323400--323496
13
7.7
12
76
16
63
0
10
6
83
0.80
323400--323469
20
3.5
18
85
11
68
0
7
7
85
0.73
323400--323491
22
4.3
21
86
8
114
0
10
5
83
0.79
323399--323491
42
2.2
41
87
11
127
0
11
5
82
0.82
323420--323489
20
3.4
20
86
7
79
0
14
2
82
0.77
334115--334179
33
2.0
33
87
6
96
35
13
16
33
1.89
342068--342660
53
11.4
53
76
14
447
38
2
4
54
1.33
342202--342581
98
3.8
99
78
13
368
39
1
4
55
1.28
342252--342347
43
2.2
45
83
9
117
34
2
5
58
1.32
342143--342453
153
2.0
154
85
7
429
38
1
5
55
1.30
342456--342749
53
6.2
45
72
17
161
39
3
3
54
1.33
342351--342842
151
3.3
146
76
13
422
39
2
4
54
1.31
342401--342614
98
2.2
97
82
12
269
40
1
3
54
1.27
342639--342846
47
4.5
46
75
16
157
39
1
4
53
1.32
344393--344430
2
19.0
2
100
0
76
50
0
0
50
1.00
344855--344901
16
2.9
17
76
20
55
55
0
0
44
0.99
350808--350873
33
2.0
33
85
5
89
39
12
18
30
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
350829--350856
13
2.2
13
100
0
56
35
14
17
32
1.90
350894--350959
19
3.8
19
73
22
81
37
18
10
33
1.85
350896--350958
32
2.0
32
96
0
117
36
19
11
33
1.87
351360--351593
97
2.4
97
82
2
274
27
30
12
29
1.93
356534--356584
20
2.5
21
83
3
68
35
13
7
43
1.73
358412--358445
17
2.0
17
88
11
52
35
2
5
55
1.39
358685--358744
30
2.0
30
100
0
120
43
6
26
23
1.78
360547--360623
16
4.7
17
76
10
63
61
11
2
24
1.43

Tables:   1   2   3

The End!