genome.fa.s204.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold204
Parameters: 2 7 7 80 10 50 1000
Length:  427869

Tables:   1   2   3   

This is table  3  of  3  ( 321 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376851--377002	29	5.2	28	73	15	112	29	28	17	24	1.97
377006--378806	28	63.3	28	77	8	1087	28	29	16	25	1.96
377033--378069	143	7.3	140	77	5	552	30	29	16	23	1.96
378083--378222	33	4.6	28	78	7	82	22	32	11	32	1.90
378142--378254	33	3.4	33	86	4	147	24	28	12	34	1.92
378142--378272	66	2.0	65	84	1	172	24	26	11	37	1.89
378142--378271	33	4.0	33	85	5	138	24	26	11	36	1.90
378318--378406	29	3.0	29	81	6	108	24	30	12	32	1.92
378320--378406	30	2.9	30	83	6	106	25	29	12	32	1.93
378291--378403	59	1.9	57	82	10	138	25	30	10	33	1.90
378747--378794	24	2.0	24	95	0	87	29	20	22	27	1.99
378861--379063	29	6.7	31	75	11	165	23	31	10	34	1.89
378861--379065	61	3.4	59	75	12	193	23	31	10	34	1.89
378850--379099	122	2.1	120	77	11	251	26	30	12	31	1.92
379071--379229	62	2.6	62	79	6	162	30	30	22	16	1.96
379107--379204	31	3.2	29	81	11	97	29	28	24	17	1.97
379122--379225	31	3.4	30	85	10	122	31	33	21	13	1.92
380041--380087	8	5.8	8	85	5	58	78	4	2	14	0.99
380034--380095	25	2.5	24	78	5	70	75	4	1	17	1.05
380041--380095	17	3.3	17	82	12	78	78	5	1	14	1.02
381731--381951	31	7.1	31	86	6	238	22	29	14	33	1.93
381727--381972	62	3.9	63	84	8	281	21	29	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381729--382925	34	36.2	33	81	7	561	19	31	12	36	1.89
381861--383022	34	34.8	33	81	6	974	18	31	12	36	1.88
381876--383022	267	4.3	268	82	4	1275	18	31	12	37	1.88
383125--383155	14	2.2	14	100	0	62	12	29	29	29	1.94
383194--383225	15	2.1	16	94	5	57	31	18	9	40	1.83
383621--383658	19	2.0	19	100	0	76	36	15	15	31	1.90
384347--384539	31	6.1	31	73	8	149	23	29	13	34	1.93
384347--384498	61	2.5	62	79	4	173	25	27	14	32	1.94
384451--385340	34	26.7	32	79	7	596	19	31	12	36	1.89
385343--385612	142	1.9	141	84	3	366	25	26	18	29	1.98
392336--392386	18	2.7	19	81	6	59	54	0	0	45	0.99
392648--392748	43	2.3	44	88	5	152	28	15	7	47	1.74
394312--394360	10	4.9	10	94	0	62	48	0	6	44	1.27
394317--394360	2	22.0	2	95	0	79	50	0	2	47	1.13
394652--394689	2	19.0	2	89	10	60	50	0	2	47	1.15
394817--394841	2	12.5	2	100	0	50	52	0	48	0	1.00
395129--395206	39	2.0	39	92	0	129	26	16	12	43	1.84
398318--398374	24	2.5	22	77	20	64	73	1	22	1	1.02
399501--399532	2	16.0	2	100	0	64	50	0	0	50	1.00
400135--400170	16	2.3	16	90	4	56	25	5	11	58	1.54
400451--400475	6	4.2	6	100	0	50	84	0	0	16	0.63
403313--403374	30	2.1	30	100	0	124	53	8	0	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403313--403394	30	2.7	30	90	7	114	52	6	0	41	1.26
405365--405419	15	3.4	16	82	12	76	83	1	14	0	0.73
405363--405419	18	3.4	17	80	7	71	84	1	14	0	0.71
405411--405455	12	3.6	13	75	19	51	68	0	26	4	1.08
405400--405450	25	2.0	25	100	0	102	68	0	27	3	1.07
405363--405418	17	3.3	18	85	5	64	83	1	14	0	0.72
408150--408455	79	3.9	78	82	6	330	32	13	26	27	1.94
408397--408508	51	2.2	51	85	3	154	31	11	25	31	1.91
408484--408564	28	3.0	29	80	12	100	30	19	27	22	1.98
408602--408669	28	2.4	28	87	0	91	26	14	35	23	1.94
411746--411783	19	2.0	20	94	5	69	78	0	2	18	0.86
413068--413102	16	2.2	16	89	0	52	42	0	2	54	1.15
413742--413814	31	2.4	31	93	4	121	36	28	15	19	1.92
418089--418118	13	2.2	14	94	5	53	80	0	20	0	0.72
419208--419417	29	7.0	30	75	10	117	23	27	13	36	1.92
419249--419329	34	2.5	32	86	9	112	16	23	16	44	1.86
419311--419789	89	5.4	88	80	5	443	26	27	11	34	1.91
419311--419757	29	15.1	29	80	5	387	25	28	11	34	1.91
419793--420104	31	9.9	31	77	10	253	30	32	18	18	1.95
419793--420104	64	4.9	63	80	4	335	30	32	18	18	1.95
419796--420137	95	3.6	95	82	3	402	30	32	17	18	1.95
420208--420510	52	5.8	51	73	10	222	26	21	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425368--425496	52	2.5	52	98	0	249	27	18	18	34	1.95
425505--425529	13	1.9	13	100	0	50	36	16	16	32	1.90
425572--425669	19	5.8	18	71	28	90	36	17	12	33	1.87
425591--425647	13	3.9	13	76	24	60	33	17	14	35	1.90
425570--425667	32	3.0	32	96	1	178	35	17	12	34	1.87
425604--425668	20	3.7	20	75	25	74	35	18	12	33	1.88
426322--426440	49	2.4	49	92	0	193	34	15	25	24	1.95
426522--427222	49	14.7	49	79	11	728	31	18	24	24	1.97
426522--427222	92	7.4	94	86	7	740	31	18	24	24	1.97
426754--426818	21	3.0	21	67	18	53	29	20	23	27	1.98
427215--427704	65	7.6	65	86	7	581	20	17	33	28	1.95
427215--427704	97	5.0	97	83	9	574	20	17	33	28	1.95
427215--427704	162	3.0	160	88	3	698	20	17	33	28	1.95
427711--427862	34	4.5	34	82	11	181	32	13	33	20	1.91
427711--427862	69	2.2	68	87	5	220	32	13	33	20	1.91

Tables:   1   2   3

The End!