genome.fa.s2057.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2057
Parameters: 2 7 7 80 10 50 1000
Length:  447875

Tables:   1   2   3   

This is table  3  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273471--273544	20	3.7	19	80	10	69	31	14	9	44	1.77
282856--282881	13	2.0	13	100	0	52	30	15	15	38	1.88
287516--287562	17	2.8	17	71	12	51	31	0	4	63	1.13
288089--288121	16	2.1	16	94	0	57	48	0	0	51	1.00
288079--288133	22	2.4	23	85	8	78	50	0	0	49	1.00
292003--292039	2	18.5	2	100	0	74	51	0	0	48	1.00
292039--292066	2	14.0	2	100	0	56	50	0	50	0	1.00
292368--292413	2	24.5	2	82	12	62	47	2	0	50	1.13
293996--294057	20	3.5	20	68	32	68	32	17	14	35	1.90
293996--294070	32	2.3	33	95	4	143	32	17	14	36	1.90
293996--294070	13	6.8	12	72	27	69	32	17	14	36	1.90
294000--294090	32	2.8	31	90	8	112	31	17	16	34	1.92
294120--294172	19	2.7	20	85	2	63	37	15	15	32	1.88
294277--294332	21	2.7	21	83	5	69	44	16	3	35	1.65
295775--295817	18	2.4	18	84	3	52	62	0	0	37	0.95
296230--296291	30	2.1	30	100	0	124	30	3	6	59	1.38
297084--297123	21	2.0	20	85	9	55	45	7	5	42	1.54
298095--298150	26	2.1	27	87	9	80	66	0	3	30	1.09
299345--299396	19	2.7	20	81	3	70	36	11	13	38	1.81
300084--300142	24	2.4	25	88	8	93	25	32	1	40	1.66
306488--306524	3	12.3	3	88	0	56	29	29	0	40	1.57
308386--308442	19	2.9	19	86	2	78	33	17	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308495--308560	20	3.7	20	69	26	74	36	12	16	34	1.86
308493--308559	33	2.0	33	97	0	125	38	11	16	32	1.85
319844--319911	20	3.8	20	67	25	69	38	8	14	38	1.78
319844--319909	33	2.0	33	93	0	114	39	9	15	36	1.79
320808--321769	49	20.8	49	72	16	643	30	17	25	26	1.98
320854--321722	136	6.3	142	73	17	576	30	18	25	26	1.98
321101--321625	88	6.0	88	91	1	772	28	18	25	27	1.98
321236--321572	39	7.9	39	70	17	206	27	19	26	27	1.99
321539--321775	92	2.5	92	82	7	262	30	17	26	25	1.97
321766--322306	34	16.8	33	79	10	532	36	12	31	19	1.89
321990--322047	26	2.2	27	90	3	91	36	13	31	18	1.90
322219--322272	27	2.0	27	92	0	90	29	14	33	22	1.94
322185--322306	61	2.0	61	88	0	181	33	13	31	21	1.91
322287--322598	32	10.0	30	85	6	354	31	14	29	24	1.95
322287--322598	62	5.0	61	82	8	353	31	14	29	24	1.95
324500--324566	33	2.0	33	88	0	98	35	11	11	40	1.79
324520--324544	13	1.9	13	100	0	50	36	16	16	32	1.90
324610--324634	13	1.9	13	100	0	50	32	16	16	36	1.90
324643--324763	52	2.3	52	97	0	224	34	18	18	28	1.94
331646--331714	1	69.0	1	82	0	84	91	8	0	0	0.43
331954--331985	17	1.9	17	93	6	57	84	9	6	0	0.78
332988--333667	71	10.0	61	77	15	398	20	34	12	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332965--333707	34	21.8	33	76	14	496	20	34	12	32	1.90
333114--333700	34	16.7	35	81	9	502	20	35	12	32	1.90
333114--333702	71	8.4	70	84	8	754	20	35	12	32	1.90
333114--333695	107	5.5	104	86	7	702	20	35	12	31	1.90
332987--333702	141	5.2	138	82	10	759	20	34	12	32	1.90
333703--333769	33	2.0	34	97	2	127	26	37	17	17	1.93
333774--334412	52	13.0	51	80	11	671	25	25	17	31	1.97
333970--334293	43	7.0	43	80	13	360	25	26	18	29	1.98
333970--334337	95	3.9	95	95	1	636	25	26	18	29	1.98
334251--334634	67	6.7	55	72	14	264	24	23	14	36	1.93
334251--334645	171	2.3	171	94	1	682	24	24	14	36	1.93
335444--335510	33	2.0	33	88	0	98	35	11	11	40	1.79
335464--335488	13	1.9	13	100	0	50	36	16	16	32	1.90
335553--335577	13	1.9	13	100	0	50	32	16	16	36	1.90
335586--335706	52	2.3	52	97	0	224	34	18	18	28	1.94
343218--343242	13	1.9	13	100	0	50	36	16	16	32	1.90
343200--343263	33	2.0	33	90	3	103	37	15	15	31	1.89
345012--345037	3	8.7	3	100	0	52	30	0	0	69	0.89
359855--359924	12	5.8	11	75	17	50	84	7	5	2	0.86
359870--359953	10	8.8	9	75	16	71	83	13	1	2	0.81
359873--359953	24	3.4	24	76	5	76	82	13	1	2	0.83
359870--359947	5	16.4	5	75	11	58	83	12	1	2	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359870--359953	20	4.4	18	81	15	98	83	13	1	2	0.81
361373--361828	29	15.9	29	82	4	566	31	30	16	21	1.96
361376--361850	28	16.6	28	80	5	511	32	30	16	20	1.95
361372--361828	143	3.2	144	93	0	783	31	30	16	21	1.95
361380--361850	57	8.2	57	88	3	624	32	30	16	20	1.95
361893--362129	52	4.9	49	73	15	206	25	23	17	33	1.96
361948--362217	91	3.0	91	91	0	423	24	24	20	31	1.98
363078--363127	19	2.6	19	96	0	91	34	12	18	36	1.87
367221--367999	164	4.7	166	82	3	858	50	9	10	29	1.68
367221--367999	330	2.4	330	82	3	915	50	9	10	29	1.68
368535--368580	21	2.2	21	84	0	56	32	19	17	30	1.95
368607--368741	50	2.7	51	87	4	204	26	18	13	41	1.87
371083--371384	157	1.9	158	81	6	371	30	22	12	34	1.91
371078--371408	79	4.2	79	76	11	284	30	22	11	34	1.90
375868--376019	79	1.9	79	86	0	214	28	24	13	32	1.94
379111--379135	13	1.9	13	100	0	50	40	16	8	36	1.77
379788--379829	21	2.0	21	90	0	66	42	19	4	33	1.72
381726--381758	17	1.9	17	93	0	57	24	27	9	39	1.85
386270--386300	3	10.3	3	92	0	53	29	35	0	35	1.58
387986--388057	20	3.7	19	88	3	90	38	13	15	31	1.87
394249--394279	3	10.3	3	92	0	53	29	35	0	35	1.58
395965--396036	20	3.7	19	88	3	90	38	13	15	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402808--402936	52	2.5	52	96	0	240	27	17	18	35	1.94
402945--402969	13	1.9	13	100	0	50	36	16	16	32	1.90
403022--403084	19	3.7	18	70	24	55	39	17	9	33	1.82
403016--403099	32	2.6	32	92	0	141	40	16	9	33	1.81
406605--406664	21	2.9	21	79	20	72	20	25	1	53	1.55
406628--406671	21	2.1	21	83	8	54	20	27	0	52	1.47
408315--408340	13	2.0	13	100	0	52	38	15	15	30	1.88
408297--408360	32	2.0	33	87	3	94	40	17	14	28	1.88
412406--412436	15	2.1	15	93	0	53	48	16	22	12	1.80
414516--414554	13	3.0	13	92	0	60	30	15	15	38	1.88
414666--414711	21	2.2	20	81	11	58	32	19	4	43	1.71
417113--417138	13	2.0	13	100	0	52	38	15	15	30	1.88
417095--417158	32	2.0	33	87	3	94	40	17	14	28	1.88
418794--418833	19	2.1	19	85	0	53	40	12	17	30	1.86
418873--418897	13	1.9	13	100	0	50	36	16	16	32	1.90
426349--426374	13	2.0	13	100	0	52	30	15	15	38	1.88
426329--426392	32	2.0	33	87	3	94	29	14	14	42	1.84
426445--426499	20	2.8	20	88	5	76	29	12	16	41	1.85
431767--431807	10	3.6	11	84	15	57	87	12	0	0	0.53
431766--431824	24	2.3	24	91	8	91	86	11	1	0	0.65
431766--431824	9	6.7	9	79	11	59	86	11	1	0	0.65
432841--433899	61	18.1	55	75	13	308	26	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433127--433930	61	13.5	61	80	8	782	25	25	19	29	1.98
433243--433336	48	1.9	49	85	6	129	25	34	17	23	1.96
433288--433921	245	2.6	243	84	3	783	25	24	19	30	1.98
434571--434704	49	2.7	50	89	1	207	27	18	13	40	1.88
437062--437181	51	2.4	51	91	0	204	30	27	13	28	1.94
436986--437387	130	3.1	128	80	2	383	28	23	13	33	1.93
437193--437303	51	2.2	51	85	7	154	29	18	13	38	1.89
437282--437540	79	3.3	79	81	3	252	27	24	13	34	1.92
440690--440728	4	9.8	4	94	0	69	23	2	0	74	0.94
445799--445834	15	2.4	16	86	13	58	47	19	19	13	1.83

Tables:   1   2   3

The End!