genome.fa.s214.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold214
Parameters: 2 7 7 80 10 50 1000
Length:  304316

Tables:   1   2   3   4   

This is table  2  of  4  ( 362 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126043--126171	7	18.9	7	71	20	87	37	0	0	61	1.02
126047--126108	22	2.8	22	85	4	81	41	0	1	56	1.09
126072--126171	20	5.0	21	77	18	97	36	0	0	64	0.94
126070--126171	41	2.5	40	81	12	102	36	0	0	63	0.94
126075--126167	37	2.6	35	82	14	118	35	0	0	64	0.94
126379--126445	29	2.2	30	84	12	93	53	0	0	46	1.00
129232--129256	2	12.5	2	100	0	50	48	0	0	52	1.00
129262--129288	8	3.4	8	100	0	54	22	0	25	51	1.48
129262--129288	12	2.2	12	100	0	54	22	0	25	51	1.48
129865--129919	14	3.9	14	78	4	56	43	0	0	56	0.99
129846--129922	29	2.6	30	84	10	106	42	0	0	57	0.99
130147--130201	25	2.2	25	86	0	74	60	1	0	38	1.08
130445--130488	19	2.3	19	84	0	61	50	2	2	45	1.27
130961--131016	20	2.8	21	78	13	55	42	0	0	57	0.99
131057--131092	18	2.0	18	88	0	54	44	0	0	55	0.99
131405--131445	21	2.0	21	90	9	66	36	0	0	63	0.95
131793--131857	13	4.8	13	74	14	53	49	0	0	50	1.00
132195--132227	14	2.4	14	90	10	50	42	0	0	57	0.98
132352--132436	19	4.4	19	71	18	59	57	0	0	42	0.98
132757--132801	23	1.9	24	81	4	56	33	0	2	64	1.06
134150--134407	72	3.6	71	79	8	245	54	11	2	31	1.48
134121--134407	72	3.9	73	78	9	239	54	11	2	31	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134620--134674	10	5.4	10	75	16	51	38	1	0	60	1.08
134640--134680	20	2.0	22	90	9	68	41	0	0	58	0.98
137374--137432	28	2.2	27	79	14	68	49	3	1	45	1.28
137685--137735	22	2.2	24	80	13	63	35	0	1	62	1.06
137686--137734	21	2.3	20	80	16	55	32	0	2	65	1.04
138390--138424	17	2.1	16	89	5	52	31	0	2	65	1.07
138387--138450	23	2.8	23	86	6	78	32	1	1	64	1.13
138387--138448	12	5.3	12	84	5	83	30	1	1	66	1.11
139691--139841	7	18.8	8	69	22	54	37	0	0	60	1.06
139700--139850	19	7.8	19	68	24	70	37	0	0	61	1.06
139697--139759	29	2.2	28	86	10	85	38	1	1	58	1.17
139699--139766	29	2.5	27	79	15	77	36	1	1	60	1.15
139817--139875	14	4.1	14	76	23	61	25	0	1	72	0.93
139817--139881	12	5.4	12	81	9	71	26	0	1	72	0.94
139822--139881	17	3.4	17	79	13	59	25	0	1	73	0.93
139831--139881	18	3.0	16	75	13	57	25	0	1	72	0.95
139828--139881	23	2.3	23	77	0	72	24	0	1	74	0.92
140153--140180	2	14.0	2	100	0	56	50	0	0	50	1.00
140313--140383	13	5.8	12	77	14	65	57	2	2	36	1.28
140313--140383	25	2.9	24	76	16	65	57	2	2	36	1.28
142587--142801	107	2.0	108	96	1	398	37	9	4	48	1.57
142731--142784	24	2.2	25	86	3	74	44	9	1	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147241--147286	17	2.7	18	80	9	53	47	2	0	50	1.13
147369--147446	32	2.4	32	77	14	81	52	1	1	44	1.17
147508--147578	29	2.6	27	75	14	74	35	2	1	60	1.20
147520--147603	40	2.2	38	81	10	98	33	3	3	59	1.32
147814--147873	19	3.3	19	68	13	63	31	15	6	46	1.71
147805--147873	35	2.0	35	100	0	138	31	14	5	47	1.68
148297--148321	2	12.5	2	100	0	50	48	0	0	52	1.00
148370--148417	21	2.3	21	82	7	53	52	0	2	45	1.12
148904--148982	17	4.6	17	68	12	54	41	3	0	54	1.18
148989--149025	13	2.9	13	85	14	51	64	0	0	35	0.94
150503--150537	14	2.4	15	90	4	54	40	2	0	57	1.14
150648--150689	21	2.0	21	90	0	66	66	0	0	33	0.92
153965--154015	27	2.0	26	88	7	77	52	0	0	47	1.00
153956--154030	35	2.1	34	83	11	89	50	0	0	49	1.00
155514--155547	2	17.0	2	100	0	68	50	0	0	50	1.00
164101--164133	16	2.0	17	94	5	59	6	24	24	45	1.75
168152--168240	32	2.7	32	82	16	103	53	1	1	43	1.15
168692--168727	18	2.0	18	89	10	56	72	2	0	25	0.98
168945--168993	13	3.7	13	81	5	53	69	2	0	28	1.00
168943--168993	6	8.0	6	77	18	50	66	1	0	31	1.03
170248--170289	12	3.5	12	80	9	50	73	4	0	21	1.01
170329--170373	23	2.0	23	86	8	65	66	0	2	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171002--171054	2	26.5	2	100	0	106	50	0	0	49	1.00
171485--171557	3	22.7	3	76	20	60	67	0	2	30	1.05
171467--171544	40	2.0	40	89	0	120	64	0	7	28	1.21
171803--171861	27	2.5	22	77	20	64	59	0	3	37	1.14
171809--171867	27	2.3	26	85	8	77	59	0	3	37	1.14
172898--172956	11	5.1	11	75	17	57	64	1	0	33	1.04
172876--172961	35	2.4	35	88	1	118	62	2	2	32	1.20
172896--172942	24	1.9	25	87	12	71	63	0	0	36	0.94
172852--172940	17	5.2	17	72	6	63	59	2	3	34	1.26
172900--172959	18	3.3	18	73	15	61	63	1	0	35	1.05
172909--172991	8	9.9	8	75	11	60	65	3	0	31	1.10
172940--172998	17	3.5	17	83	4	66	64	5	0	30	1.15
173879--173910	14	2.2	15	94	5	57	34	3	0	62	1.11
174039--174123	26	3.0	26	73	20	73	52	0	0	47	1.00
174088--174146	21	3.0	21	83	9	72	57	0	0	42	0.98
174101--174139	19	2.2	18	90	9	62	56	0	0	43	0.99
175468--175515	21	2.3	22	79	17	57	56	0	14	29	1.39
175832--175930	11	9.0	12	69	17	56	37	2	0	60	1.08
176458--176546	41	2.2	40	81	14	105	55	1	1	42	1.14
176516--176565	15	3.1	16	80	13	50	44	0	0	56	0.99
176565--176602	9	4.2	9	83	10	51	73	0	0	26	0.83
176565--176603	17	2.3	17	90	0	60	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176479--176603	8	15.2	8	70	21	55	57	0	0	42	0.98
177432--177492	4	14.5	4	81	10	59	73	0	3	22	0.97
177871--177944	5	15.8	5	71	18	52	52	0	2	44	1.15
177867--177944	27	2.8	29	80	5	97	52	0	2	44	1.14
180020--180069	23	2.2	22	82	7	55	32	0	4	64	1.12
181830--181882	22	2.5	22	81	3	63	69	0	1	28	0.99
182272--182331	28	2.1	30	84	12	81	61	3	1	33	1.22
186542--186606	32	2.1	31	83	16	82	61	7	3	27	1.38
196273--196310	2	19.0	2	94	0	67	2	50	0	47	1.15
196545--196604	29	2.1	29	84	6	77	1	16	3	78	0.97
196805--196888	5	16.6	5	73	21	61	1	20	3	75	1.03
196807--196888	16	5.2	15	71	21	53	1	20	3	74	1.04
200304--200380	27	2.9	27	98	0	145	63	6	11	18	1.48
200665--200730	31	2.2	29	83	5	78	56	0	0	43	0.99
201669--201705	4	9.8	4	82	11	51	21	0	2	75	0.92
202483--202535	16	3.3	16	83	0	70	49	16	15	18	1.80
202474--202535	32	1.9	32	83	0	79	45	14	14	25	1.83
202771--202816	23	2.0	22	87	12	65	30	2	6	60	1.34
203147--203210	24	2.8	24	76	6	62	56	0	6	37	1.25
203184--203238	21	2.6	22	83	13	64	60	0	7	32	1.24
203384--203440	22	2.8	20	77	15	62	56	1	0	42	1.10
203389--203469	29	2.8	28	72	9	74	58	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203385--203486	42	2.5	39	75	18	98	56	2	0	40	1.14
203763--203787	13	1.9	13	100	0	50	56	0	0	44	0.99
203772--203837	28	2.3	30	81	5	82	62	4	1	31	1.25
205399--205430	3	10.7	3	93	0	55	0	37	0	62	0.95
213189--213229	21	1.9	22	90	5	66	39	0	0	60	0.96
213176--213253	28	2.7	30	86	7	108	42	1	0	56	1.07
213520--213561	6	7.0	6	88	0	66	50	16	0	33	1.46
214375--214410	2	18.0	2	100	0	72	50	0	0	50	1.00
217107--217150	22	2.1	20	87	8	61	56	0	2	40	1.11
221511--221556	2	23.0	2	95	0	83	52	0	0	47	1.00

Tables:   1   2   3   4