genome.fa.s216.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold216
Parameters: 2 7 7 80 10 50 1000
Length:  469096

Tables:   1   2   3   

This is table  3  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272980--273017	16	2.3	17	86	4	51	26	5	23	44	1.74
274180--274210	13	2.5	12	90	10	53	0	0	9	90	0.46
274181--274235	18	3.0	18	83	2	56	3	3	14	78	1.03
281261--281310	19	2.6	19	93	0	82	36	18	14	32	1.90
291835--291905	27	2.6	27	93	0	106	15	18	42	23	1.88
294081--294118	20	1.9	20	100	0	76	44	10	7	36	1.68
296152--296387	96	2.4	96	96	0	436	31	12	30	25	1.92
302594--302774	52	3.5	52	94	0	317	29	17	17	35	1.93
302783--302807	13	1.9	13	100	0	50	36	16	16	32	1.90
302850--302947	19	5.8	18	68	28	72	36	17	12	33	1.87
302869--302925	13	3.9	13	72	24	51	31	17	15	35	1.92
302848--302945	32	3.0	32	92	1	160	35	17	12	34	1.87
314046--314073	13	2.2	13	100	0	56	28	14	17	39	1.89
314026--314091	33	2.0	33	88	5	98	30	15	13	40	1.85
321139--321178	8	4.9	8	84	6	53	87	12	0	0	0.54
321149--321189	17	2.3	17	91	8	64	85	14	0	0	0.60
321147--321176	11	2.6	11	94	5	51	90	10	0	0	0.47
321139--321181	9	4.8	9	85	8	61	86	13	0	0	0.58
321139--321192	19	3.1	17	75	15	56	85	14	0	0	0.61
322454--323002	30	17.8	30	79	8	557	24	29	14	31	1.95
322458--323002	61	8.8	60	82	6	572	24	29	15	31	1.95
322461--323002	92	5.8	91	82	7	608	24	29	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323079--323682	34	19.3	32	73	14	369	21	30	12	35	1.90
322457--323172	342	2.1	339	79	9	724	23	29	14	32	1.94
322990--323682	61	11.0	67	74	14	314	21	30	12	35	1.91
323113--323672	186	3.0	180	81	8	628	21	30	12	35	1.90
323394--323639	119	2.0	121	88	3	363	21	32	11	33	1.90
323666--323733	34	2.0	34	82	2	82	22	36	7	33	1.82
323738--324724	87	11.0	87	82	8	1052	26	25	18	30	1.98
323886--324037	39	3.7	39	71	14	124	26	22	22	28	1.99
323999--325059	49	22.8	49	74	11	767	26	25	17	30	1.97
324503--324815	43	7.1	43	80	11	310	26	26	18	29	1.98
325779--325827	16	3.1	16	96	0	89	48	12	8	30	1.69
325814--325841	13	2.2	13	100	0	56	42	14	14	28	1.84
325890--325915	13	2.0	13	100	0	52	30	15	15	38	1.88
325901--326035	51	2.6	51	94	2	227	31	17	14	37	1.89
334696--334751	20	2.8	20	86	0	76	42	14	10	32	1.80
334645--334822	71	2.5	72	81	4	182	43	12	14	28	1.83
342317--342373	14	3.9	14	74	14	53	54	0	3	42	1.17
342358--342429	16	4.4	16	82	1	63	56	4	2	36	1.33
342354--342433	32	2.4	34	77	8	85	56	3	2	37	1.31
342562--342596	15	2.2	16	90	5	54	48	2	2	45	1.32
342776--342809	13	2.6	13	90	0	59	55	0	5	38	1.24
343922--343967	13	3.6	13	75	16	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343904--343949	16	2.8	17	83	12	60	36	0	2	60	1.09
344654--344694	20	2.0	20	86	9	57	29	2	0	68	1.03
344690--344720	16	2.0	15	93	6	53	41	0	0	58	0.98
346909--346968	17	3.6	17	71	22	56	43	0	0	56	0.99
347161--347221	19	3.2	19	84	11	70	49	3	0	47	1.18
347161--347222	18	3.3	19	84	4	81	48	3	0	48	1.17
347255--347301	19	2.4	20	89	3	69	40	0	0	59	0.97
348588--348614	2	13.5	2	100	0	54	48	0	0	51	1.00
351395--351525	65	2.0	64	98	1	253	18	13	16	51	1.77
354203--354796	215	2.8	213	91	3	961	36	17	15	30	1.91
354633--354962	167	2.0	167	95	1	590	36	17	15	30	1.91
358490--358521	15	2.1	15	94	0	55	21	0	0	78	0.76
359457--359508	17	3.2	16	89	10	79	67	0	1	30	1.02
359457--359500	9	5.3	9	74	20	51	70	0	0	29	0.88
359457--359500	15	2.8	16	93	6	72	70	0	0	29	0.88
359526--359626	8	13.6	7	70	14	60	65	4	0	28	1.20
359526--359627	15	6.8	15	71	15	59	65	4	0	28	1.19
361447--361492	3	15.3	3	95	0	65	26	0	6	67	1.15
365235--365326	30	2.8	33	82	12	127	30	3	8	57	1.45
366267--366310	2	22.0	2	92	0	70	45	2	0	52	1.13
367577--367644	6	12.3	6	73	14	58	45	0	0	54	0.99
367577--367644	22	3.1	22	78	4	66	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367567--367647	16	5.0	16	88	7	110	44	0	1	54	1.08
368910--368972	25	2.5	25	75	17	58	42	0	11	46	1.39
370426--370486	19	3.4	17	76	24	63	57	0	0	42	0.98
370707--370746	14	3.1	14	82	10	50	57	0	0	42	0.98
373216--373285	32	2.2	33	82	7	81	60	1	2	35	1.21
373589--373632	20	2.3	19	85	14	56	31	0	9	59	1.29
374433--374505	23	3.0	23	74	16	67	50	0	0	49	1.00
375415--375506	42	2.2	42	82	3	105	15	15	29	40	1.87
379623--379683	22	2.8	22	71	14	54	60	0	0	39	0.97
382522--382556	18	1.9	18	94	0	61	40	0	0	60	0.97
382965--382989	2	12.5	2	100	0	50	52	0	0	48	1.00
387531--387587	19	2.9	19	86	2	78	31	15	15	36	1.90
391880--391917	20	1.9	20	94	0	67	39	7	18	34	1.80
394445--394516	20	3.7	19	87	7	83	29	15	16	38	1.89
394562--394592	13	2.4	13	94	0	53	35	16	9	38	1.81
394546--394613	33	2.1	33	88	5	102	32	13	16	38	1.87
398098--398160	29	2.2	29	97	0	117	38	23	4	33	1.76
407348--407397	23	2.2	23	85	7	66	40	0	0	60	0.97
411941--412036	40	2.4	40	80	1	113	25	21	18	34	1.96
415923--415962	16	2.5	16	79	0	53	20	2	22	55	1.56
416331--416367	16	2.2	18	85	14	60	59	0	2	37	1.12
416400--416457	8	7.4	8	77	11	66	74	3	0	22	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416400--416465	23	2.9	23	80	10	73	75	3	0	21	0.93
416400--416464	16	4.3	14	77	14	67	75	3	0	21	0.94
416400--416464	7	8.7	7	77	9	58	75	3	0	21	0.94
424199--424236	17	2.2	17	86	9	51	44	0	0	55	0.99
424474--424500	2	13.5	2	100	0	54	51	0	0	48	1.00
429507--429556	23	2.2	23	85	7	66	40	0	0	60	0.97
434963--435019	21	2.9	21	79	7	57	36	1	15	45	1.57
434963--435025	19	3.3	19	76	10	56	38	1	15	44	1.57
437439--437534	40	2.4	40	80	1	113	25	21	18	34	1.96
441420--441459	16	2.5	16	79	0	53	20	2	22	55	1.56
441831--441867	16	2.2	18	85	14	60	59	0	2	37	1.12
441900--441957	8	7.4	8	77	11	66	74	3	0	22	0.97
441900--441965	23	2.9	23	80	10	73	75	3	0	21	0.93
441900--441964	16	4.3	14	77	14	67	75	3	0	21	0.94
441900--441964	7	8.7	7	77	9	58	75	3	0	21	0.94
454937--454984	22	2.1	23	85	11	64	41	0	0	58	0.98
454937--454984	23	2.1	22	85	11	62	41	0	0	58	0.98
460360--460416	21	2.9	21	79	7	57	36	1	15	45	1.57
460360--460422	19	3.3	19	76	10	56	38	1	15	44	1.57
467216--467247	16	1.9	17	93	6	57	62	0	3	34	1.11
467212--467291	17	4.6	18	72	18	55	55	1	2	41	1.21
467278--467346	8	8.6	8	71	17	54	72	4	0	23	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467309--467344	14	2.4	14	90	9	54	77	0	0	22	0.76

Tables:   1   2   3

The End!