genome.fa.s217.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold217
Parameters: 2 7 7 80 10 50 1000
Length:  207949

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180888--181002	51	2.3	51	87	0	167	32	29	8	29	1.87
180987--181056	28	2.5	28	83	6	97	22	27	21	28	1.99
181016--181271	79	3.2	77	76	7	221	24	26	16	32	1.96
184663--184706	16	2.8	16	80	20	56	68	9	15	6	1.38
186064--186594	27	19.4	27	75	8	360	24	30	13	31	1.94
186064--186594	55	9.7	54	80	4	546	24	30	13	31	1.94
186064--186594	82	6.5	82	81	4	547	24	30	13	31	1.94
186544--186967	28	14.4	28	78	10	352	28	30	16	24	1.97
186544--186966	147	2.9	141	77	11	395	28	30	17	24	1.97
186585--186967	119	3.2	116	84	6	450	29	31	16	22	1.96
187830--187923	20	4.7	20	74	7	75	36	14	13	35	1.86
193609--193825	111	1.9	112	80	8	255	32	13	16	37	1.87
194280--194364	37	2.3	37	93	0	152	28	24	9	37	1.86
195129--195406	75	3.8	74	81	7	298	27	16	10	45	1.80
196241--196389	44	3.4	43	82	5	174	21	21	16	40	1.91
196241--196449	44	4.8	44	79	9	140	20	20	18	41	1.91
196241--196445	88	2.3	87	80	8	202	20	20	17	41	1.90
196510--196638	41	3.2	41	71	4	127	17	27	14	39	1.89
196527--196942	81	5.2	80	81	3	361	18	23	14	43	1.87
196546--196934	40	9.6	40	68	5	183	17	22	15	43	1.87
196510--196942	162	2.7	161	77	4	494	18	23	15	43	1.87
197740--198039	164	1.8	163	85	8	417	30	12	8	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199001--199032	12	2.7	12	95	0	55	28	0	6	65	1.16
205798--206179	165	2.3	165	80	8	386	47	9	11	30	1.72

Tables:   1   2

The End!