genome.fa.s219.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold219
Parameters: 2 7 7 80 10 50 1000
Length:  770726

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665820--665845	13	2.0	13	100	0	52	30	15	15	38	1.88
665800--665863	32	2.0	33	87	9	96	28	17	15	39	1.90
666544--666587	21	2.1	21	83	8	54	27	31	2	38	1.69
668206--668252	21	2.3	21	76	23	55	42	4	19	34	1.70
668373--668424	13	4.0	13	100	0	104	38	15	15	30	1.88
670495--670525	15	2.1	15	93	0	53	12	22	16	48	1.80
672329--672373	21	2.1	21	84	8	56	22	20	4	53	1.63
674592--674617	13	2.0	13	100	0	52	30	15	15	38	1.88
676755--676801	21	2.3	21	76	23	55	42	4	19	34	1.70
676922--676973	13	4.0	13	97	0	95	36	15	17	30	1.91
676959--677037	20	3.7	20	78	15	77	44	15	15	25	1.85
677679--678012	166	2.0	166	100	0	668	29	20	20	29	1.98
679217--679247	15	2.1	15	93	0	53	12	22	16	48	1.80
683314--683339	13	2.0	13	100	0	52	30	15	15	38	1.88
683517--683926	205	2.0	205	93	0	703	39	14	8	37	1.76
686615--686773	84	1.9	84	82	7	198	25	19	3	51	1.63
688832--688857	13	2.0	13	100	0	52	30	15	15	38	1.88
690015--690068	20	2.8	19	82	2	63	38	14	11	35	1.82
694193--694277	42	2.0	42	97	0	161	47	16	21	15	1.83
696499--696532	10	3.3	10	88	8	50	29	11	0	58	1.33
699809--699983	20	7.7	20	70	25	109	42	12	16	28	1.84
699809--699983	90	1.9	91	95	1	316	42	12	16	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702937--702975	20	1.9	21	94	5	71	38	20	20	20	1.94
703080--703131	20	2.6	20	84	6	61	34	9	23	32	1.87
704017--704042	13	2.0	13	100	0	52	38	15	15	30	1.88
707491--707597	52	2.1	52	94	0	187	36	12	19	31	1.89
707575--707605	10	3.1	10	90	0	53	41	6	29	22	1.78
712865--712990	67	1.9	67	81	0	153	19	19	22	38	1.94
713671--713804	32	4.2	32	75	0	108	26	15	25	32	1.96
713847--713975	35	3.7	34	74	7	116	38	16	20	24	1.92
714748--714787	20	2.0	20	95	0	71	47	5	12	35	1.63
720362--720399	7	5.3	7	85	14	51	0	13	0	86	0.56
720357--720399	14	2.9	15	80	16	54	0	16	0	83	0.64
720365--720400	15	2.4	15	90	9	56	0	11	0	88	0.50
720354--720401	17	2.8	17	87	12	64	0	14	0	85	0.60
723452--723477	13	2.0	13	100	0	52	38	15	15	30	1.88
725695--725744	21	2.3	21	80	10	57	56	4	18	22	1.58
727100--727124	13	1.9	13	100	0	50	36	16	16	32	1.90
727080--727145	32	2.0	33	88	2	98	34	12	13	39	1.82
727189--727213	13	1.9	13	100	0	50	32	16	16	36	1.90
727222--727342	52	2.3	52	97	0	224	34	18	18	28	1.94
735605--735686	30	2.7	31	88	1	112	25	28	18	28	1.98
735635--736825	34	35.8	34	79	13	1218	20	33	12	32	1.91
735945--735996	27	1.9	27	96	0	95	23	38	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735635--736846	71	18.1	68	87	8	1223	20	33	12	32	1.91
735635--736846	175	7.3	174	83	11	1248	20	33	12	32	1.91
735633--736846	105	12.1	99	79	13	897	20	33	12	32	1.91
736828--736968	34	4.2	34	93	0	241	27	36	17	19	1.93
736963--737888	49	18.9	49	81	7	985	25	25	17	31	1.97
736963--737896	98	9.5	98	86	6	1127	25	25	17	31	1.97
737832--738147	170	1.9	170	95	1	580	23	25	12	37	1.90
737987--738125	67	2.2	63	80	8	147	22	25	13	38	1.91
738081--738287	49	4.0	51	79	8	204	24	25	15	33	1.95
737688--738541	394	2.2	394	98	0	1656	23	25	13	36	1.92
738226--738690	170	2.7	170	93	1	763	22	26	13	37	1.91
738381--738527	67	2.3	65	82	8	167	22	25	12	39	1.89
739271--739337	33	2.0	33	88	0	98	34	11	13	40	1.81
739291--739315	13	1.9	13	100	0	50	36	16	16	32	1.90
739381--739405	13	1.9	13	100	0	50	32	16	16	36	1.90
739414--739534	52	2.3	52	97	0	224	34	18	18	28	1.94
743319--743349	15	2.1	15	93	0	53	48	16	22	12	1.80
745363--745440	20	3.7	20	74	15	75	26	15	15	42	1.87
745561--745607	21	2.3	21	79	20	55	34	19	4	42	1.70
745563--745605	20	2.2	19	84	16	52	32	18	4	44	1.71
747982--748007	13	2.0	13	100	0	52	38	15	15	30	1.88
750090--750156	33	2.0	33	91	5	109	34	13	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750111--750140	13	2.3	13	94	0	51	36	10	16	36	1.82
754524--754587	13	5.4	13	73	21	68	31	14	17	37	1.89
754509--754608	33	3.0	32	88	5	139	33	12	18	37	1.87
757530--757593	33	2.0	32	84	3	83	28	15	15	40	1.88
759822--759867	3	15.3	3	90	0	74	39	0	30	30	1.57
764793--764862	33	2.1	33	84	7	88	34	20	12	32	1.90
764962--765010	13	4.2	13	73	24	54	36	16	12	34	1.86
764777--765093	169	1.9	169	95	1	573	33	18	15	32	1.93
765060--765115	19	2.9	19	89	2	76	33	16	17	32	1.92
764732--765145	169	2.5	166	85	9	499	34	17	15	32	1.91
765673--765742	22	3.4	22	73	18	78	28	30	1	40	1.65
767092--767134	20	2.1	20	82	4	50	11	30	41	16	1.83
767570--767598	13	2.2	13	100	0	58	41	17	13	27	1.87

Tables:   1   2   3   4   5

The End!