Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold220
Parameters: 2 7 7 80 10 50 1000
Length:  3999181

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2201 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3912685--3912731
21
2.2
22
77
11
53
46
0
8
44
1.33
3912816--3912852
18
2.0
20
89
10
60
62
0
2
35
1.10
3912796--3912878
33
2.5
32
80
19
91
62
0
1
36
1.03
3912794--3912873
20
4.4
19
66
29
57
63
0
1
35
1.02
3912793--3912906
59
2.0
54
83
11
140
62
0
0
36
1.02
3915160--3915258
51
1.9
51
93
0
171
32
15
15
37
1.88
3916582--3916623
20
2.0
21
86
9
59
50
0
0
50
1.00
3919156--3919195
20
2.1
19
86
9
55
55
5
0
40
1.22
3921538--3921604
22
3.0
22
72
10
64
65
0
0
34
0.93
3922587--3922626
14
2.7
16
81
14
50
37
0
0
62
0.95
3929338--3929373
12
2.8
13
87
8
56
19
16
41
22
1.90
3944963--3944999
15
2.3
17
90
9
60
56
10
0
32
1.34
3948711--3948764
27
2.0
28
85
10
76
48
1
5
44
1.37
3950410--3950452
21
2.1
21
86
4
61
39
6
2
51
1.42
3955321--3955353
16
1.9
17
88
11
50
42
0
0
57
0.98
3955801--3955862
22
2.8
22
90
0
97
38
20
4
35
1.74
3964115--3964219
34
3.0
34
83
8
147
38
32
2
26
1.71
3964682--3964719
18
2.1
18
85
9
51
55
2
0
42
1.14
3964769--3964821
18
3.2
17
76
23
60
60
1
0
37
1.08
3964892--3964954
21
3.0
21
83
0
81
34
1
12
50
1.50
3965359--3965555
21
9.5
20
74
10
137
34
6
9
50
1.60
3965549--3965580
16
2.0
16
93
0
55
21
0
0
78
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3965638--3965678
21
2.0
21
85
0
55
41
2
4
51
1.36
3966201--3966233
16
2.0
17
88
5
50
57
0
0
42
0.98
3967416--3967467
21
2.5
20
76
14
61
34
0
21
44
1.52
3971783--3971809
14
1.9
14
100
0
54
14
0
11
74
1.08
3979090--3979125
2
18.0
2
100
0
72
50
0
0
50
1.00
3979406--3979451
19
2.4
19
79
17
51
30
0
0
69
0.89
3980661--3980686
2
13.0
2
100
0
52
50
0
0
50
1.00
3983367--3983417
18
2.8
18
80
14
59
27
0
0
72
0.85
3983365--3983409
19
2.4
19
81
11
56
26
0
0
73
0.84
3984018--3984060
3
14.3
3
85
0
59
34
4
2
58
1.32
3984448--3984472
11
2.3
11
100
0
50
60
0
0
40
0.97
3984862--3984896
3
12.0
3
87
6
54
65
2
0
31
1.07
3985582--3985611
15
2.0
15
93
0
51
76
0
16
6
0.99
3993674--3993713
22
1.9
22
90
10
66
2
5
5
87
0.73
3993674--3993713
19
2.0
20
85
4
55
2
5
5
87
0.73
3993654--3993720
23
3.0
22
72
17
57
4
14
7
73
1.22
3993890--3993919
2
15.0
2
100
0
60
50
0
0
50
1.00
3994631--3994659
2
14.5
2
100
0
58
0
48
0
51
1.00
3994659--3994684
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!