genome.fa.s220.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold220
Parameters: 2 7 7 80 10 50 1000
Length:  3999181

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219769--219807	4	9.8	4	100	0	78	51	23	0	25	1.49
219767--219830	8	8.2	8	87	6	60	50	15	0	34	1.45
219767--219830	12	5.2	12	81	7	56	50	15	0	34	1.45
230786--230813	3	9.3	3	100	0	56	67	0	32	0	0.91
235481--235526	15	3.1	15	96	0	83	4	41	0	54	1.20
235481--235526	5	9.2	5	92	0	74	4	41	0	54	1.20
237544--237586	2	21.5	2	90	0	68	48	2	0	48	1.14
237907--237958	12	4.2	12	78	12	52	25	0	5	69	1.10
237890--237946	14	3.8	15	74	25	50	29	0	5	64	1.15
238095--238179	30	2.9	30	73	1	82	38	1	1	58	1.13
240767--240848	37	2.2	36	78	8	85	45	2	4	47	1.37
248406--248431	2	13.0	2	100	0	52	0	0	50	50	1.00
253298--253322	12	2.1	12	100	0	50	8	0	28	64	1.22
254644--254668	2	12.5	2	100	0	50	52	0	48	0	1.00
259784--259845	29	2.1	29	81	3	70	37	6	0	56	1.25
260220--260253	6	5.7	6	96	0	50	41	0	0	58	0.98
262714--262789	29	2.7	30	76	10	79	51	1	0	47	1.09
271720--271758	12	3.2	12	92	0	60	48	7	0	43	1.31
271720--271758	2	19.5	2	83	0	51	48	7	0	43	1.31
272285--272312	2	14.0	2	100	0	56	50	0	0	50	1.00
287169--287200	13	2.4	13	94	5	55	21	9	0	68	1.17
297280--297348	36	1.9	36	100	0	138	46	15	17	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298631--298667	3	12.3	3	100	0	74	67	0	0	32	0.91
305236--305277	2	21.0	2	95	0	75	2	50	0	47	1.14
306322--306347	2	13.0	2	100	0	52	50	0	0	50	1.00
306703--306741	19	2.0	20	90	9	64	30	0	0	69	0.89
307650--307683	2	17.0	2	100	0	68	50	0	0	50	1.00
313853--313877	2	12.5	2	100	0	50	52	0	48	0	1.00
314501--314539	19	2.1	19	90	4	62	53	0	0	46	1.00
316054--316082	2	14.5	2	100	0	58	0	48	0	51	1.00
316082--316111	2	15.0	2	92	0	51	46	0	0	53	1.00
317161--317188	2	14.0	2	100	0	56	0	50	0	50	1.00
321987--322027	20	2.0	20	85	4	55	19	0	12	68	1.21
325894--325960	29	2.3	30	80	12	77	50	0	0	49	1.00
326322--326368	13	3.6	13	85	5	60	38	0	0	61	0.96
326653--326734	25	3.2	23	70	23	65	37	1	1	59	1.13
326642--326812	58	3.0	56	84	7	204	39	0	2	57	1.16
326706--326799	31	3.2	30	71	17	97	38	0	2	59	1.09
326716--326812	27	3.2	31	69	24	89	40	0	2	57	1.10
327091--327120	3	10.0	3	100	0	60	33	0	0	66	0.92
335966--336017	20	2.6	20	82	11	54	46	1	0	51	1.12
336041--336119	33	2.5	31	84	8	90	41	1	3	53	1.27
336072--336123	14	3.6	14	75	14	61	40	0	3	55	1.18
336076--336131	29	1.9	29	88	0	85	46	0	3	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336043--336142	29	3.2	29	78	9	83	45	2	3	50	1.28
336797--336838	6	7.0	6	78	10	50	50	0	2	47	1.14
336790--336838	11	4.2	11	82	10	53	48	0	2	48	1.12
336790--336838	23	2.1	24	84	3	64	48	0	2	48	1.12
337055--337087	14	2.3	15	90	10	52	45	0	0	54	0.99
337560--337620	26	2.4	25	82	17	72	50	0	1	47	1.10
337603--337645	22	2.0	22	90	9	70	39	0	0	60	0.97
339150--339212	15	4.2	14	76	13	63	55	1	0	42	1.09
339499--339560	16	3.2	21	74	21	64	37	1	0	61	1.06
339603--339641	16	2.4	16	91	0	60	51	0	0	48	1.00
340144--340182	20	2.0	20	84	0	51	51	2	0	46	1.14
340580--340637	21	2.8	20	69	5	53	56	1	0	41	1.09
341471--341519	11	4.3	11	82	14	55	61	0	0	38	0.96
341473--341518	13	3.9	12	83	13	60	58	0	0	41	0.98
342067--342137	15	4.7	15	70	16	56	46	0	0	53	1.00
342109--342150	22	1.9	22	90	0	66	35	0	0	64	0.94
341524--342708	537	2.2	529	82	8	1400	40	8	9	40	1.69
342649--342690	21	2.0	20	90	4	66	38	0	0	61	0.96
343070--343109	13	3.1	13	77	0	53	65	0	0	35	0.93
343066--343126	26	2.4	26	78	8	72	54	0	0	45	1.00
343996--344664	39	17.0	39	84	1	773	47	17	21	13	1.81
344840--344872	16	2.0	17	88	5	50	51	6	9	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353753--353782	2	15.0	2	100	0	60	50	0	0	50	1.00
360277--360315	19	2.1	19	85	0	51	25	5	15	53	1.62
369565--369593	2	14.5	2	100	0	58	48	0	0	51	1.00
371706--371818	51	2.2	51	83	0	145	20	32	34	12	1.90
372823--372847	5	5.0	5	100	0	50	20	0	60	20	1.37
373083--373121	2	19.0	2	89	5	60	46	2	0	51	1.14
373078--373121	21	2.1	21	100	0	88	43	4	0	52	1.22
373121--373150	2	15.0	2	100	0	60	50	0	50	0	1.00
389110--389157	20	2.4	20	96	0	87	35	18	14	31	1.91
396454--396484	2	15.5	2	100	0	62	51	0	48	0	1.00
405455--405560	52	2.0	52	94	0	185	43	12	16	28	1.83
406055--406122	16	4.4	15	76	10	66	30	1	0	67	0.99
406055--406122	31	2.2	30	84	10	84	30	1	0	67	0.99
408350--408533	97	1.9	98	96	1	316	33	13	9	44	1.76
410140--410177	10	4.0	10	86	13	62	52	7	0	39	1.31
410141--410175	18	1.9	18	100	0	70	54	5	0	40	1.24
410622--410652	16	1.9	16	93	0	53	45	0	0	54	0.99
410856--410891	17	2.1	17	89	5	54	58	0	0	41	0.98
423490--423534	22	2.0	24	86	8	67	60	0	2	37	1.09
423544--423578	2	17.0	2	94	5	61	48	0	2	48	1.16
425082--425131	3	16.7	3	91	0	82	32	4	0	64	1.12
427124--427160	17	2.2	17	95	0	65	5	21	21	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427195--427228	2	17.0	2	100	0	68	50	0	0	50	1.00
431049--431158	34	3.2	34	72	7	107	33	4	17	44	1.69
431035--431165	68	1.9	69	85	4	185	32	3	17	45	1.66
432426--432482	28	2.0	28	89	0	87	31	8	19	40	1.82
433913--433955	21	2.0	21	90	0	68	0	48	13	37	1.43
437469--437590	54	2.3	54	94	0	208	36	11	13	39	1.80
440396--440434	19	2.1	19	90	0	60	43	10	12	33	1.77
448844--448879	18	1.9	19	88	5	56	61	2	27	8	1.39
449771--449831	8	8.0	8	74	17	58	36	0	0	63	0.94
449768--449831	17	4.1	17	73	20	68	37	0	0	62	0.95
449763--449806	14	2.9	14	78	18	52	38	0	0	61	0.96
449763--449826	28	2.2	31	83	8	80	39	0	0	60	0.97
449806--449840	19	1.9	17	88	11	52	37	2	0	60	1.12
465723--465772	21	2.3	22	86	3	66	38	0	4	58	1.17
465809--465860	10	5.2	10	77	9	61	38	0	0	61	0.96
466086--466136	8	6.0	8	75	20	50	31	0	0	68	0.90
466083--466134	28	1.9	26	92	7	86	34	0	0	65	0.93
466087--466160	36	2.1	37	94	5	134	32	0	0	67	0.91
466067--466161	35	2.7	35	86	3	129	40	1	0	58	1.05
466100--466167	17	3.8	18	73	7	68	39	0	0	60	0.97
466140--466178	17	2.3	17	81	0	51	48	0	0	51	1.00
466482--466566	29	2.9	28	74	10	82	57	5	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466434--466529	49	2.0	49	81	8	115	58	4	3	34	1.33
469940--470000	2	30.5	2	100	0	122	0	49	0	50	1.00
473255--473289	2	17.5	2	100	0	70	48	0	0	51	1.00
473642--473683	18	2.3	18	88	8	59	0	33	7	59	1.25
474529--474553	2	12.5	2	100	0	50	48	0	0	52	1.00
476624--476657	16	2.1	17	88	5	52	47	0	0	52	1.00
485931--485990	16	4.0	15	72	20	54	60	0	0	40	0.97
485929--485999	17	4.6	15	73	19	58	59	0	0	40	0.98
486548--486625	18	4.3	18	69	15	63	48	0	1	50	1.09
488463--488491	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19