genome.fa.s2224.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2224
Parameters: 2 7 7 80 10 50 1000
Length:  651981

Tables:   1   2   3   

This is table  3  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485115--485251	53	2.6	53	95	1	238	36	18	17	27	1.93
485275--485305	10	3.1	10	95	0	53	25	29	3	41	1.71
485305--485343	13	3.0	13	92	0	69	30	15	17	35	1.91
487526--499748	475	25.9	474	81	4	12238	31	18	13	36	1.90
499789--503222	474	7.2	473	80	5	3460	31	18	13	36	1.89
500901--503223	476	4.9	475	81	2	2648	31	18	13	37	1.89
503224--504870	475	3.5	470	79	7	1753	36	14	17	31	1.89
503804--504696	448	2.0	448	84	1	1164	36	14	17	31	1.90
505787--505812	13	2.0	13	100	0	52	30	15	15	38	1.88
505851--505926	21	3.7	21	82	3	109	28	18	11	40	1.86
505871--505944	20	3.7	20	81	3	103	31	20	13	35	1.91
505851--505944	41	2.3	41	100	0	188	29	19	12	38	1.89
506443--511965	476	11.7	472	79	7	4908	36	14	17	31	1.90
508433--511935	937	3.7	936	83	5	3892	36	14	17	32	1.90
517213--522628	475	11.4	470	77	7	4534	31	18	14	36	1.90
522669--526106	478	7.1	478	73	11	1382	31	18	13	36	1.89
523743--523831	46	2.0	44	91	8	144	13	19	12	55	1.69
523786--526106	478	4.9	477	78	7	2131	31	18	13	36	1.89
528790--528862	20	3.7	20	81	7	103	31	20	13	34	1.92
528770--528862	40	2.3	41	98	1	179	30	19	12	37	1.89
531444--534962	476	7.5	474	81	6	3661	36	14	17	31	1.90
531508--534946	936	3.6	936	83	5	3893	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532616--534976	475	5.0	471	79	6	2262	36	14	17	31	1.90
540237--545643	476	11.4	473	79	4	5212	31	17	14	36	1.90
545684--549115	475	7.2	473	80	5	3483	31	18	13	37	1.89
546753--546837	43	2.0	43	100	0	170	14	18	11	55	1.69
549117--550763	475	3.5	470	79	7	1753	36	14	17	31	1.89
549697--550589	448	2.0	448	84	1	1164	36	14	17	31	1.90
551680--551705	13	2.0	13	100	0	52	30	15	15	38	1.88
551744--551819	21	3.7	21	82	3	109	28	18	11	40	1.86
551764--551837	20	3.7	20	81	3	103	31	20	13	35	1.91
551744--551837	41	2.3	41	100	0	188	29	19	12	38	1.89
552120--556980	476	10.3	472	79	8	3675	35	14	17	31	1.90
554492--556978	937	2.6	937	88	3	3476	35	14	17	32	1.90
557731--557756	13	2.0	13	100	0	52	30	15	15	38	1.88
558467--558528	31	2.0	31	100	0	124	45	25	3	25	1.69
560322--560346	13	1.9	13	100	0	50	32	16	20	32	1.94
560335--560411	20	3.6	20	74	19	66	44	14	14	27	1.83
566930--571743	475	10.1	475	82	3	5252	36	13	18	31	1.90
566930--571743	951	5.1	944	80	4	4847	36	13	18	31	1.90
572112--572165	19	2.8	20	91	2	83	29	14	18	37	1.91
572195--572259	33	2.0	33	87	6	96	36	13	16	32	1.89
576572--576646	20	3.8	20	100	0	150	34	14	18	32	1.91
578019--578077	32	1.9	30	83	13	75	59	10	10	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578337--578400	32	2.0	33	87	3	94	28	15	14	42	1.86
579027--579117	39	2.3	41	79	9	107	34	23	5	37	1.78
584882--584926	21	2.1	21	84	8	56	22	20	4	53	1.63
587117--587168	19	2.7	20	87	6	79	28	13	15	42	1.85
589097--589149	19	2.7	21	88	8	76	26	15	16	41	1.88
589180--589243	33	1.9	33	87	6	94	37	14	17	31	1.89
590706--590827	62	2.0	62	83	0	154	33	14	18	33	1.91
590763--591826	476	2.2	475	84	4	1376	36	12	17	32	1.88
591949--594483	476	5.3	470	79	7	2458	35	13	17	32	1.89
593094--593133	19	2.1	19	95	0	71	5	17	20	57	1.58
594041--595301	425	3.0	415	79	7	1396	36	13	17	31	1.89
594909--598793	949	4.1	948	81	5	4162	36	13	18	31	1.90
594954--598793	473	8.1	473	80	5	3905	36	13	18	31	1.90
605518--609447	476	8.4	474	83	5	3958	31	17	13	36	1.90
609830--609882	20	2.7	20	85	8	72	41	16	13	28	1.86
616043--616081	13	3.0	13	92	0	60	28	17	17	35	1.94
616203--616248	21	2.2	20	81	11	58	32	19	4	43	1.71
618560--618614	20	2.7	21	80	2	67	38	14	14	32	1.87
620111--620556	240	1.9	242	85	3	623	28	15	15	39	1.88
621477--621541	33	2.0	33	87	6	96	33	18	13	33	1.90
621571--621626	19	2.9	19	89	2	76	37	17	14	30	1.90
621624--621689	20	3.7	20	67	26	65	39	12	18	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621611--621689	33	2.4	33	97	0	149	40	12	16	30	1.86
623932--623971	21	2.0	21	90	5	64	47	0	20	32	1.50
630268--630321	13	4.6	13	70	25	57	37	16	12	33	1.87
630272--630336	33	2.0	33	90	6	105	33	18	13	33	1.90
630387--630483	32	3.0	32	89	1	131	39	13	16	30	1.87
630407--630464	13	5.0	13	74	23	58	39	13	15	31	1.86
630366--630453	19	4.9	19	70	17	71	35	14	15	34	1.89
631592--632963	453	2.9	460	80	9	1412	31	18	13	36	1.90
633916--633982	37	1.9	35	88	11	102	29	25	11	32	1.92
634441--634466	13	2.0	13	100	0	52	30	15	15	38	1.88
634421--634484	32	2.0	33	87	3	94	28	14	17	40	1.88
635212--635237	12	2.2	12	100	0	52	50	7	0	42	1.31
636396--636420	13	1.9	13	100	0	50	32	16	16	36	1.90
639532--639598	37	1.9	35	88	11	102	29	25	11	32	1.92
640057--640082	13	2.0	13	100	0	52	30	15	15	38	1.88
640037--640100	32	2.0	33	87	3	94	28	14	17	40	1.88
640932--641005	37	2.0	37	86	0	103	37	5	22	33	1.77
640969--643287	475	4.9	474	81	3	2529	36	13	18	31	1.89
640969--643290	953	2.4	952	82	3	2788	36	13	18	31	1.89
642872--643709	419	2.0	418	82	3	1031	38	13	16	31	1.87
643898--647228	477	7.0	473	82	4	3387	31	17	13	36	1.89
646440--647074	159	4.0	160	67	13	405	31	17	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648002--648027	13	2.0	13	100	0	52	30	15	15	38	1.88
647982--648046	33	2.0	33	84	6	87	29	13	15	41	1.86

Tables:   1   2   3

The End!