genome.fa.s2224.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2224
Parameters: 2 7 7 80 10 50 1000
Length:  651981

Tables:   1   2   3   

This is table  2  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222548--222594	21	2.3	20	82	10	60	31	19	4	44	1.70
224975--225000	13	2.0	13	100	0	52	38	15	15	30	1.88
227493--241229	476	28.9	477	85	2	17124	32	18	14	35	1.91
241228--242724	478	3.1	476	92	1	2408	32	17	14	35	1.90
242723--258611	476	33.5	476	83	3	18748	32	18	14	34	1.91
242745--258611	950	16.7	953	85	3	19039	32	18	14	34	1.91
263094--263147	15	3.4	15	73	14	54	9	50	1	38	1.45
263110--263171	18	3.6	18	72	12	58	11	43	1	43	1.50
263095--263165	33	2.2	33	92	0	115	11	46	1	40	1.48
263123--263194	12	6.5	11	75	16	53	11	47	1	40	1.48
263125--263204	42	1.9	42	92	0	133	8	46	1	43	1.42
265844--267929	476	4.4	475	85	2	2639	32	17	14	35	1.90
272247--272280	16	2.1	16	89	10	52	32	41	2	23	1.69
274239--274302	33	2.0	32	90	3	101	37	17	14	31	1.89
275027--280097	475	10.7	474	87	2	6829	31	18	14	35	1.91
275027--280097	952	5.3	949	88	1	7022	31	18	14	35	1.91
281577--281602	13	2.0	13	100	0	52	30	15	15	38	1.88
281557--281620	33	2.0	32	87	3	92	26	12	20	40	1.88
284179--284274	47	2.0	50	84	10	128	33	16	14	35	1.89
284390--284441	25	2.2	23	80	19	63	61	19	0	19	1.35
289551--289603	20	2.7	21	83	16	69	30	15	18	35	1.92
289718--289756	20	2.0	19	90	5	60	30	7	23	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296647--296677	3	10.3	3	92	0	53	29	35	0	35	1.58
298178--298358	73	2.5	73	98	0	344	32	17	18	30	1.95
298325--298377	20	2.7	21	83	16	69	30	15	18	35	1.92
298480--298518	20	2.0	19	95	5	69	30	10	23	35	1.88
302448--302510	33	1.9	33	87	6	92	30	15	14	39	1.87
302543--302602	20	3.0	20	82	7	86	36	18	13	31	1.89
304067--304092	13	2.0	13	100	0	52	30	15	15	38	1.88
306640--306665	13	2.0	13	100	0	52	38	15	15	30	1.88
308736--308766	15	2.1	15	93	0	53	12	22	16	48	1.80
310570--310614	21	2.1	21	84	8	56	22	20	4	53	1.63
312827--312852	13	2.0	13	100	0	52	30	15	15	38	1.88
318779--319004	52	4.3	52	79	9	194	34	12	24	28	1.92
318888--319004	51	2.3	52	85	4	148	33	14	23	28	1.94
318988--319062	27	2.7	28	87	2	98	21	18	34	25	1.96
319046--319167	51	2.4	51	86	5	156	33	11	22	31	1.90
321593--321653	19	3.6	17	73	26	58	32	19	13	34	1.90
321610--321634	13	1.9	13	100	0	50	32	16	16	36	1.90
321578--321653	32	2.4	32	90	0	116	32	18	14	34	1.91
322486--323311	55	14.3	59	86	5	924	25	19	27	27	1.99
324308--324345	20	1.9	20	89	10	60	5	2	7	84	0.86
326028--326062	17	2.1	17	100	0	70	40	0	34	25	1.56
337117--337292	52	3.4	52	79	9	171	33	12	24	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337222--337338	51	2.3	52	83	4	139	32	14	24	28	1.95
337322--337396	27	2.7	27	89	6	107	22	20	33	24	1.97
337382--337502	51	2.3	52	83	5	147	34	11	21	32	1.89
339551--339576	13	2.0	13	100	0	52	30	15	15	38	1.88
339614--339689	32	2.4	32	88	0	116	31	17	17	34	1.93
339727--339784	21	2.7	22	81	7	75	32	15	15	36	1.89
342795--342833	15	2.6	15	100	0	78	33	15	25	25	1.95
344850--345072	97	2.3	97	96	0	401	28	13	32	25	1.93
347489--358586	476	23.4	476	85	3	13917	31	18	13	35	1.91
358412--358773	187	1.9	188	85	1	494	33	20	13	31	1.92
358584--378918	475	42.8	477	83	4	23027	31	18	14	35	1.90
381145--381182	19	2.0	19	85	10	51	15	10	13	60	1.59
380480--382632	477	4.5	475	85	4	2626	31	17	14	35	1.90
383035--383060	13	2.0	13	100	0	52	38	15	15	30	1.88
383017--383080	32	2.0	33	90	3	103	42	15	14	28	1.86
388662--388700	13	3.0	13	92	0	69	35	17	15	30	1.91
388811--388856	21	2.2	20	81	11	58	32	19	4	43	1.71
390539--390629	39	2.3	40	79	9	105	37	5	23	34	1.78
391190--391246	21	2.7	21	100	0	114	43	10	19	26	1.83
392073--393233	474	2.4	471	83	4	1485	31	18	14	36	1.91
393154--393313	80	2.0	80	100	0	320	40	18	11	30	1.86
393631--394008	158	2.4	159	88	4	552	30	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393234--394370	633	1.8	616	82	5	1478	32	18	14	35	1.90
394044--394769	399	1.8	399	85	2	1037	31	19	13	36	1.90
396867--401780	474	10.2	472	73	11	2986	31	18	13	36	1.89
399151--399331	90	2.0	90	100	0	362	30	14	15	39	1.87
402971--403551	313	1.9	314	85	4	814	32	16	12	38	1.86
402385--404828	788	3.1	784	83	4	2899	31	17	13	37	1.89
403747--404340	313	1.9	314	83	3	775	32	15	13	38	1.87
404009--406339	476	4.9	473	80	5	2369	32	17	14	35	1.90
403965--406339	953	2.5	944	81	5	2648	32	17	14	35	1.90
406087--406611	272	1.9	270	81	6	623	34	17	12	35	1.88
405595--407085	746	2.0	745	84	4	1923	33	18	14	34	1.90
406343--409724	476	7.1	474	82	4	3908	32	18	14	35	1.90
411073--411713	158	4.0	155	69	11	424	31	18	12	36	1.88
410685--413548	475	5.9	472	76	9	2318	31	17	13	37	1.89
414430--416160	477	3.7	471	79	7	1778	32	17	12	37	1.88
414446--417661	913	3.4	923	80	8	3219	32	17	13	36	1.89
414430--417656	469	6.9	467	78	9	2751	32	17	13	36	1.89
417922--418358	231	1.9	232	82	2	556	32	18	12	35	1.89
418146--421335	476	6.7	475	82	4	3362	31	18	13	35	1.90
429142--429175	3	11.3	3	93	0	59	29	32	0	38	1.58
433093--433217	52	2.4	52	93	0	205	28	17	18	36	1.94
433100--433237	52	2.6	51	85	6	181	31	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433290--433359	33	2.1	33	89	0	104	40	14	11	34	1.82
433315--433339	13	1.9	13	100	0	50	32	16	16	36	1.90
436235--436894	159	4.2	159	65	16	403	33	18	14	34	1.91
435864--438347	476	5.2	474	87	3	3162	31	18	13	35	1.90
437939--438774	425	2.0	426	83	6	1063	33	18	12	36	1.88
438365--440800	475	5.1	473	85	3	2884	32	17	13	36	1.89
441190--441219	13	2.3	13	94	0	51	36	16	13	33	1.88
449618--449671	20	2.7	20	94	0	90	44	14	14	25	1.84
450943--454027	476	6.5	475	84	3	3815	31	17	13	36	1.90
453682--454443	416	1.8	410	82	4	967	31	17	13	37	1.89
454048--457038	474	6.3	475	81	3	3208	31	17	13	36	1.89
457363--458012	62	10.5	62	88	2	921	24	26	18	30	1.98
457363--458012	125	5.2	124	91	1	948	24	26	18	30	1.98
457363--457995	187	3.4	186	88	2	932	25	27	18	28	1.98
460593--460723	50	2.6	49	79	2	145	28	24	10	36	1.89
460659--461031	79	4.7	77	77	8	315	26	24	15	33	1.95
463110--463144	4	8.8	4	93	0	61	22	2	0	74	0.95
464855--464893	21	1.9	20	85	15	53	41	2	0	56	1.13
466322--466346	13	1.9	13	100	0	50	36	16	16	32	1.90
466366--466431	33	2.0	33	87	0	96	39	15	12	33	1.84
466388--466412	13	1.9	13	100	0	50	32	16	16	36	1.90
468984--469059	37	2.1	37	97	0	143	31	14	27	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469389--469638	42	5.9	42	74	11	172	20	21	12	45	1.84
469469--469630	83	2.0	82	81	6	193	20	22	12	43	1.86
472589--472715	50	2.5	49	85	8	157	28	22	11	37	1.90
472654--472994	79	4.3	80	79	5	336	29	24	12	34	1.92
472864--473038	79	2.2	79	88	0	260	30	27	10	31	1.91
472656--473038	158	2.4	156	78	6	378	28	25	12	33	1.92
474007--475550	476	3.2	472	80	5	1679	31	17	13	36	1.89
475456--475653	103	1.9	102	83	5	256	32	18	15	34	1.92
476402--484793	475	17.7	473	81	5	8614	31	17	13	36	1.89
485075--485145	20	3.6	19	77	7	70	39	16	14	29	1.88

Tables:   1   2   3