Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2225
Parameters: 2 7 7 80 10 50 1000
Length:  146236

Tables:   1   2   

This is table  2  of  2  ( 164 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102191--102228
17
2.2
17
90
0
58
65
7
2
23
1.32
102262--102305
19
2.3
19
92
0
70
45
6
9
38
1.63
103814--104027
79
2.7
77
80
9
204
33
8
7
49
1.63
104656--104680
12
2.1
12
100
0
50
92
0
8
0
0.40
105067--105190
62
2.0
62
95
0
221
26
16
7
50
1.71
109209--109278
24
2.8
25
87
6
90
24
8
22
44
1.81
111823--111868
21
2.1
22
84
4
58
30
19
30
19
1.97
113749--113873
27
4.9
24
72
13
88
22
6
24
46
1.75
113806--113875
24
2.8
25
89
6
99
21
8
25
44
1.80
115342--115860
132
3.9
132
97
0
948
19
26
25
27
1.99
116127--116171
18
2.5
19
79
17
51
55
2
0
42
1.12
116173--116235
23
2.7
23
76
11
58
42
0
0
57
0.99
116211--116261
25
2.0
24
82
14
59
45
0
1
52
1.12
116405--116487
11
7.7
11
70
22
52
59
0
2
38
1.11
116477--116556
28
2.9
28
75
17
96
55
0
0
45
0.99
116497--116539
11
4.4
11
72
27
51
53
0
0
46
1.00
116459--116600
46
3.1
46
73
16
132
59
0
0
39
1.02
116406--116600
9
21.2
9
67
19
84
59
0
1
39
1.04
116415--116588
28
6.2
28
70
18
87
58
0
1
40
1.06
116539--116606
28
2.5
27
81
11
84
63
0
0
36
0.95
118636--118939
150
2.0
149
91
0
491
46
8
8
37
1.64
120281--120317
17
2.2
17
90
0
56
75
0
16
8
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121843--121871
6
5.0
6
91
8
51
48
0
0
51
1.00
121843--121871
11
2.5
12
94
5
51
48
0
0
51
1.00
122630--122669
16
2.5
16
88
8
55
52
5
0
42
1.23
123238--123276
17
2.3
17
100
0
78
58
7
5
28
1.47
123898--124002
15
7.0
15
75
14
92
47
0
0
51
1.07
123897--124002
5
21.0
5
70
18
69
47
0
0
51
1.07
123897--124002
11
10.5
10
71
19
69
47
0
0
51
1.07
123910--124010
52
2.0
51
84
9
134
49
0
0
49
1.07
123899--124021
16
8.1
16
73
13
80
48
1
0
48
1.16
124034--124126
16
5.8
16
74
11
75
40
11
15
32
1.83
124034--124126
32
2.9
32
82
9
109
40
11
15
32
1.83
125144--125244
16
6.3
16
74
0
85
43
29
13
12
1.82
125150--125250
48
2.1
48
83
3
132
44
27
13
13
1.82
126704--126769
21
3.2
20
80
8
69
75
1
3
19
1.01
126721--126767
15
3.2
15
75
3
51
80
0
0
19
0.70
128658--128907
129
1.9
129
89
4
389
57
3
4
35
1.33
128824--128853
15
2.0
15
93
0
51
56
0
0
43
0.99
129258--129680
121
3.4
121
88
5
639
45
8
14
31
1.74
129145--129680
251
2.1
251
90
0
838
46
7
14
32
1.72
134441--134494
25
2.2
25
83
6
65
35
0
1
62
1.06
135189--135213
3
8.3
3
100
0
50
68
0
0
32
0.90
144925--144968
22
2.1
21
87
8
63
22
11
4
61
1.48

Tables:   1   2

The End!