genome.fa.s224.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold224
Parameters: 2 7 7 80 10 50 1000
Length:  480342

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204128--204196	28	2.3	31	82	14	90	62	1	1	34	1.13
204154--204243	34	2.6	34	74	10	94	63	0	0	36	0.95
204157--204272	40	3.0	40	74	17	109	63	0	0	36	0.94
204323--204382	29	2.1	29	80	0	66	3	31	1	63	1.20
213266--213381	51	2.3	51	92	0	187	30	15	11	43	1.82
213348--213418	20	3.5	20	84	0	88	33	11	14	40	1.81
213297--213475	91	2.0	91	87	6	265	31	13	11	43	1.80
224843--225079	97	2.4	97	88	1	359	29	13	27	29	1.94
225888--226143	28	9.1	28	92	0	377	29	27	17	25	1.97
226223--226365	46	3.1	46	86	4	214	23	27	13	34	1.93
226227--226404	48	3.8	47	84	3	223	22	27	16	33	1.95
227156--227226	20	3.5	20	84	0	88	33	11	14	40	1.81
228911--228949	11	3.6	11	96	3	71	33	10	0	56	1.33
230091--230153	31	2.0	31	96	0	117	33	17	17	31	1.93
234113--234173	17	3.6	17	78	10	63	55	3	0	40	1.16
234137--234177	18	2.3	18	80	16	50	51	2	0	46	1.14
238914--238955	22	1.9	22	90	9	68	38	0	0	61	0.96
242629--242683	20	2.7	20	85	2	65	27	18	14	40	1.89
243354--243466	31	3.7	31	76	5	95	20	23	28	28	1.99
243369--243466	31	3.2	31	76	5	108	18	22	29	29	1.97
243318--243601	143	2.0	143	87	0	406	20	23	27	27	1.99
243512--243718	62	3.3	62	82	1	236	16	24	31	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243512--243699	31	6.1	31	75	0	169	14	25	32	27	1.95
243744--243854	40	2.8	40	72	14	102	42	13	24	19	1.87
245417--245458	17	2.3	19	84	12	52	66	4	14	14	1.40
247948--247995	22	2.1	23	84	3	62	52	2	0	45	1.12
247954--248010	27	2.2	26	84	15	73	57	1	1	38	1.19
253419--253493	38	2.0	38	89	0	114	40	12	14	33	1.83
253664--253724	30	2.0	30	87	6	88	22	16	11	49	1.78
256276--256337	30	2.1	30	87	0	88	27	43	9	19	1.82
260242--260272	15	2.0	16	93	6	55	77	0	0	22	0.77
260621--260645	1	25.0	1	100	0	50	0	100	0	0	0.00
265004--265312	155	2.0	155	89	1	476	31	23	8	36	1.85
271383--271434	15	3.6	14	80	17	54	40	0	0	59	0.97
271384--271457	28	2.6	29	74	18	75	47	0	0	52	1.00
284749--284867	63	1.9	63	94	1	213	49	5	16	28	1.67
286428--286455	2	14.0	2	100	0	56	50	0	0	50	1.00
293129--293162	15	2.3	15	90	5	52	8	0	11	79	0.94
295081--295124	2	22.0	2	100	0	88	50	0	0	50	1.00
295292--295361	32	2.2	32	89	0	104	47	7	7	38	1.59
295369--295397	15	1.9	15	100	0	58	75	3	0	20	0.94
306941--307252	79	4.0	79	78	7	314	33	10	25	29	1.90
309702--309836	50	2.7	51	89	2	202	40	13	19	27	1.89
311639--311668	14	2.1	15	93	6	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313400--313428	2	14.5	2	100	0	58	51	0	0	48	1.00
313857--313888	2	16.0	2	93	0	55	46	0	0	53	1.00
314746--314787	21	2.0	22	90	4	68	52	2	4	40	1.35
315386--315415	2	14.5	2	93	6	51	46	3	0	50	1.18
315912--316099	81	2.4	78	95	2	331	35	7	20	36	1.81
316070--316374	79	3.9	77	78	6	326	37	8	22	32	1.84
315993--316336	158	2.2	155	77	11	347	36	8	20	34	1.84
316070--316357	158	1.8	158	86	3	418	37	8	21	32	1.84
318643--318784	75	1.9	74	86	1	203	26	18	16	38	1.92
319224--319300	23	3.3	23	66	7	57	62	11	1	24	1.37
319672--319707	18	2.0	18	88	0	54	27	0	2	69	1.02
319662--319716	29	1.9	28	85	10	76	25	0	3	70	1.03
319750--319788	16	2.5	16	87	4	53	17	2	12	66	1.35
319839--319887	20	2.5	20	74	12	55	12	6	14	67	1.40
322676--323263	290	2.0	290	99	0	1158	29	21	11	37	1.88
323589--323735	75	2.0	75	86	2	206	28	13	17	40	1.88
323298--324587	535	2.4	536	94	1	2228	36	13	16	32	1.88
324494--324527	16	2.1	16	88	0	50	61	2	20	14	1.46
344688--344730	15	2.9	14	77	12	50	83	13	2	0	0.74
344688--344720	16	1.9	18	88	11	52	84	12	3	0	0.72
346165--346445	29	9.9	28	85	5	350	31	28	17	22	1.97
346165--346450	57	5.0	57	86	3	355	31	28	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346165--346450	86	3.4	83	86	7	362	31	28	17	23	1.96
346505--346993	49	9.9	49	82	5	513	24	24	16	34	1.95
346505--347019	101	5.2	101	83	5	518	25	24	15	34	1.95
346505--347056	150	3.7	149	82	6	591	25	24	15	34	1.95
346569--347040	52	9.3	51	79	8	261	25	25	15	33	1.95
350991--351373	89	4.3	89	88	0	541	30	18	15	35	1.92
351699--351752	15	3.6	15	73	9	56	11	25	18	44	1.83
353791--353844	21	2.5	21	77	17	56	53	3	3	38	1.36
354481--354513	2	16.5	2	100	0	66	48	0	0	51	1.00
354637--354703	14	5.0	14	77	20	72	46	5	0	47	1.27
354647--354697	25	2.1	24	89	10	77	47	5	0	47	1.26
354637--354709	39	1.9	36	89	8	110	49	5	0	45	1.25
354984--355351	185	2.0	183	90	1	574	51	11	3	33	1.54
355865--355903	11	3.6	11	86	3	53	71	0	0	28	0.86
355865--355904	20	1.9	21	85	10	55	70	0	0	30	0.88
360779--360834	23	2.5	22	77	8	60	33	5	0	60	1.19
361937--361983	21	2.3	21	85	3	60	51	14	0	34	1.43
367087--367117	14	2.2	14	100	0	62	35	12	6	45	1.68
369079--369120	2	21.0	2	100	0	84	50	0	0	50	1.00
370987--371015	9	3.3	9	90	9	51	58	0	20	20	1.39
371713--371828	15	7.6	15	70	18	78	58	5	8	27	1.49
371701--371829	31	4.2	30	70	19	97	58	4	9	27	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371670--371769	45	2.2	46	85	1	130	56	7	10	27	1.58
371717--371828	31	3.7	30	87	1	152	58	5	8	27	1.51
373456--373495	21	1.9	21	94	0	71	45	10	2	42	1.51
390700--390738	21	1.9	21	89	5	62	20	20	12	46	1.83
393233--393286	27	2.0	27	82	13	67	51	3	5	38	1.43
395715--395778	17	3.7	17	78	10	76	32	1	1	64	1.13
395707--395780	21	3.8	21	67	27	63	36	1	1	60	1.13
395714--395785	36	2.0	36	97	0	135	33	2	1	62	1.18
396423--396458	18	2.0	18	88	0	54	61	2	0	36	1.11
400694--400721	13	2.2	13	100	0	56	39	17	14	28	1.89
400776--400808	15	2.2	15	100	0	66	39	24	6	30	1.79
400774--400819	15	2.8	16	83	16	58	36	21	10	30	1.88
403710--403798	36	2.6	33	76	13	90	56	0	1	42	1.06
406306--406334	15	1.9	15	100	0	58	68	0	0	31	0.89
406289--406339	20	2.3	24	80	12	65	62	0	0	37	0.95
408787--408824	18	2.1	18	85	9	51	44	7	10	36	1.68
408953--408981	15	1.9	15	100	0	58	68	6	0	24	1.13
408959--408984	12	2.2	12	100	0	52	69	7	0	23	1.14
409702--409742	21	2.0	21	85	9	57	43	4	0	51	1.23
409728--409764	18	2.1	18	89	0	56	51	5	0	43	1.24
412829--413010	50	3.7	49	82	4	197	28	18	12	41	1.87
412827--413011	100	1.9	100	83	4	248	28	18	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415035--415236	75	2.6	76	80	7	239	27	26	13	32	1.94
420400--420438	20	2.0	19	95	5	69	35	23	10	30	1.88
420460--420512	20	2.6	21	82	8	65	37	16	16	28	1.91
426733--426835	13	7.9	13	84	0	134	32	19	17	31	1.95
426733--426835	39	2.6	39	93	0	170	32	19	17	31	1.95
429270--429322	20	2.6	21	82	8	65	37	16	16	28	1.91
429382--429407	13	2.0	13	100	0	52	38	15	15	30	1.88
429364--429427	33	2.0	32	87	9	94	37	20	14	28	1.91
431449--433978	62	40.6	62	80	5	2529	24	24	18	32	1.97
434029--434244	44	5.2	39	74	14	168	21	25	11	41	1.87

Tables:   1   2   3