Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold224
Parameters: 2 7 7 80 10 50 1000
Length:  480342

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433940--434263
85
3.8
84
74
12
261
21
25
12
40
1.88
434253--434587
62
5.3
62
84
6
422
23
26
18
31
1.97
434553--435029
168
2.8
166
84
4
587
20
24
12
42
1.87
434550--435206
42
15.8
42
74
11
426
20
24
13
42
1.87
434549--435192
86
7.7
86
80
7
575
20
24
12
42
1.87
435051--435227
76
2.3
76
85
2
230
18
23
17
40
1.91
435091--435227
34
3.8
34
73
19
105
17
24
18
39
1.92
436731--436767
11
3.4
11
92
0
65
56
2
8
32
1.43
437479--437722
79
3.1
79
80
2
274
27
24
12
35
1.91
440132--440200
34
2.0
34
94
0
120
33
20
17
28
1.95
440381--440423
2
21.5
2
100
0
86
51
0
0
48
1.00
440764--440826
25
2.5
25
76
19
69
55
3
4
36
1.37
442274--442306
16
2.1
16
88
5
50
51
15
9
24
1.72
442312--442372
16
3.8
16
72
14
54
50
14
8
26
1.71
443612--443645
17
2.1
16
88
5
50
26
8
2
61
1.40
445673--445736
29
2.2
29
94
0
110
12
15
9
62
1.54
447715--447812
47
2.1
47
90
0
151
51
5
19
24
1.67
457613--457639
2
13.5
2
100
0
54
51
0
0
48
1.00
458998--459071
16
4.6
16
79
3
60
39
31
18
10
1.86
459012--459073
16
3.9
16
79
8
63
40
32
19
8
1.81
459012--459081
32
2.2
32
81
0
77
40
32
18
8
1.81
459059--459109
16
3.2
16
80
5
50
45
31
13
9
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
459085--459133
16
3.1
16
82
8
55
51
28
12
8
1.68
459564--459593
16
1.9
15
93
6
51
53
3
16
26
1.59
460519--460590
16
4.5
16
83
0
90
36
30
20
12
1.90
460500--460590
32
2.8
32
81
0
101
39
29
18
12
1.87
460522--460614
48
1.9
48
82
0
114
35
32
19
12
1.90
461832--461859
3
9.3
3
100
0
56
67
0
0
32
0.91
462827--462866
21
1.9
21
89
0
62
45
7
2
45
1.45
469005--469048
14
3.1
14
80
9
54
56
0
0
43
0.99
469747--469807
15
3.8
16
81
12
72
45
1
1
50
1.21
469750--469817
15
4.4
15
75
15
59
48
1
1
48
1.19

Tables:   1   2   3

The End!