genome.fa.s2259.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2259
Parameters: 2 7 7 80 10 50 1000
Length:  410483

Tables:   1   2   3   

This is table  3  of  3  ( 283 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346858--347564	62	11.6	62	83	2	770	33	19	21	24	1.97
347477--347646	93	1.8	94	88	1	261	34	17	21	27	1.95
347354--347781	215	2.0	215	90	0	671	34	18	20	26	1.96
347570--348021	61	7.4	60	83	6	509	34	19	21	24	1.96
347419--347719	154	2.0	151	84	3	397	34	18	20	26	1.96
347570--348023	242	1.9	243	91	1	741	34	19	21	24	1.96
347573--348021	121	3.7	123	83	5	599	34	19	21	24	1.96
347992--348053	32	1.9	32	93	0	106	30	27	16	25	1.96
347937--348115	93	1.9	93	90	0	286	32	22	21	22	1.98
347872--348177	154	2.0	154	83	3	384	32	20	21	25	1.98
348024--348227	62	3.3	61	80	4	239	31	18	24	25	1.97
354841--354898	11	5.5	10	76	17	55	3	10	10	75	1.15
354833--354896	32	2.0	31	85	8	85	4	9	9	76	1.14
354841--354912	32	2.3	31	81	11	83	4	11	9	75	1.18
358758--358783	13	2.0	13	100	0	52	30	15	7	46	1.74
364568--364593	13	2.0	13	100	0	52	38	15	15	30	1.88
366806--366850	21	2.1	21	84	8	56	53	4	20	22	1.63
370665--370744	20	3.8	20	75	15	79	26	15	15	43	1.85
370730--370768	13	3.0	13	96	0	69	30	17	15	35	1.91
373262--373287	13	2.0	13	100	0	52	38	15	15	30	1.88
375957--376005	8	6.5	8	76	9	50	83	14	2	0	0.73
375949--375991	21	2.1	20	91	4	68	79	16	2	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375957--376004	21	2.2	21	88	3	69	83	14	2	0	0.74
376755--376854	13	8.6	13	66	24	71	40	13	17	30	1.87
376779--376874	20	5.5	20	64	31	76	41	11	18	28	1.85
376762--376876	33	3.5	33	100	0	230	41	13	17	27	1.86
381923--382242	83	4.0	80	76	11	282	33	21	9	35	1.86
381943--382242	160	1.9	153	85	6	404	33	22	10	34	1.87
383740--383819	6	12.8	6	80	10	63	18	1	1	78	0.88
383740--383799	7	9.6	7	81	15	62	23	0	0	76	0.78
383734--383819	32	2.7	31	78	7	91	17	1	2	79	0.91
387116--387195	33	2.4	33	87	0	115	38	26	8	26	1.85
394708--394761	20	2.7	20	91	5	83	37	18	12	31	1.89
394790--394837	20	2.5	20	89	3	71	33	18	16	31	1.94
395541--395566	13	2.0	13	100	0	52	38	15	15	30	1.88
395523--395586	32	2.0	33	87	3	94	40	17	12	29	1.86
401710--401747	13	2.9	13	96	0	67	31	18	15	34	1.92
406547--406586	13	3.1	13	88	0	62	42	20	12	25	1.86
406619--406656	20	1.9	20	100	0	76	31	18	10	39	1.85
407714--408167	158	2.9	155	77	8	454	34	12	24	28	1.92
407714--408168	79	5.8	79	79	10	400	34	13	23	28	1.92
408102--408219	51	2.3	51	88	0	173	29	11	27	31	1.91
408022--408297	130	2.1	130	84	4	344	34	12	24	28	1.92

Tables:   1   2   3

The End!