Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold229
Parameters: 2 7 7 80 10 50 1000
Length:  643502

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580013--580060
24
2.0
24
95
0
87
47
10
4
37
1.57
582727--582762
17
2.1
17
94
0
63
36
0
0
63
0.94
583112--583159
25
2.0
25
88
8
73
54
0
0
45
0.99
587409--587465
23
2.4
24
83
13
66
54
0
0
45
0.99
587425--587465
11
3.4
12
86
10
57
53
0
0
46
1.00
587406--587469
26
2.4
27
75
15
71
57
0
0
42
0.98
588089--588134
18
2.5
18
86
10
58
65
2
2
30
1.16
588376--588406
14
2.2
14
94
0
53
70
0
3
25
1.02
589001--589036
17
2.1
17
89
0
54
41
25
5
27
1.77
597753--597795
19
2.3
19
84
8
52
58
0
0
41
0.98
598627--598681
26
2.1
26
86
6
76
43
1
1
52
1.22
599970--599997
6
4.7
6
100
0
56
64
0
0
35
0.94
600087--600131
14
3.3
14
84
9
58
46
0
0
53
1.00
600871--600901
2
15.5
2
100
0
62
51
0
0
48
1.00
601102--601169
21
3.2
21
77
10
59
41
0
1
57
1.08
602862--602934
37
2.0
36
82
12
87
43
0
0
56
0.99
602872--602944
16
4.7
16
73
14
55
35
0
0
64
0.94
603422--603501
20
3.9
21
79
12
85
40
0
1
58
1.06
603694--603725
2
16.0
2
100
0
64
50
0
0
50
1.00
606220--606306
44
2.0
43
82
13
106
49
0
0
50
1.00
606788--606837
2
25.0
2
100
0
100
50
0
50
0
1.00
607702--607757
24
2.4
24
82
11
64
50
1
3
44
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
608016--608080
13
5.2
12
74
20
53
67
0
0
32
0.91
608010--608080
24
2.9
23
83
10
88
69
0
0
30
0.89
608042--608116
26
3.0
24
74
12
71
56
0
0
44
0.99
608063--608144
22
3.8
22
75
18
84
50
0
0
50
1.00
608064--608163
20
4.8
21
73
16
75
51
0
0
49
1.00
608051--608167
7
16.9
7
68
24
70
53
0
0
46
1.00
608046--608191
9
14.9
10
67
22
62
55
0
0
43
1.04
608127--608191
29
2.3
27
77
15
69
58
0
1
40
1.07
609287--609361
39
1.9
39
81
10
91
61
0
0
38
0.96
609295--609361
20
3.3
20
81
10
75
59
0
0
40
0.97
609353--609382
12
2.4
12
94
5
51
40
0
0
60
0.97
611014--611084
27
2.6
27
88
6
99
46
23
7
22
1.76
612968--613013
21
2.1
22
84
4
58
19
30
19
30
1.97
615837--616025
92
2.1
92
97
0
360
24
28
19
28
1.98
616129--616155
2
13.5
2
100
0
54
51
0
0
48
1.00
618446--618507
30
2.1
30
88
5
92
46
0
0
53
1.00
618703--618765
18
3.3
18
78
10
63
53
0
0
46
1.00
618703--618761
19
2.9
21
71
19
54
54
0
0
45
0.99
618860--618910
24
2.1
24
96
0
93
37
13
3
45
1.63
621889--621965
20
4.3
18
77
15
79
57
1
0
41
1.07
621882--621949
20
3.7
20
81
13
67
58
1
0
39
1.07
621897--621965
16
4.0
16
76
12
57
57
1
0
40
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
622491--622527
3
12.7
3
88
5
58
70
0
0
29
0.88
625004--625081
5
16.2
5
70
17
58
62
0
1
35
1.03
625003--625082
24
3.2
24
72
10
72
62
0
1
36
1.03
625041--625081
19
2.1
20
95
4
75
68
0
0
31
0.90
626007--626048
2
22.0
2
80
9
52
54
0
0
45
0.99
628650--628705
16
3.5
16
85
4
78
48
0
1
50
1.11
629230--629270
3
13.7
3
100
0
82
31
0
0
68
0.90
630997--631033
16
2.2
18
85
9
51
40
10
5
43
1.63
633694--633734
19
2.2
19
95
0
73
39
7
9
43
1.65
633699--633740
19
2.2
19
86
0
57
38
11
11
38
1.79
641530--641579
25
2.0
25
96
0
91
42
20
10
28
1.84

Tables:   1   2   3   4   5

The End!