Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2292
Parameters: 2 7 7 80 10 50 1000
Length:  332330

Tables:   1   2   3   

This is table  3  of  3  ( 299 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260318--260357
20
2.0
21
90
5
64
0
7
2
90
0.55
262887--262962
24
3.0
26
77
9
68
59
0
0
40
0.98
262921--262985
33
2.0
33
87
6
96
67
3
0
29
1.05
263190--263348
9
17.0
10
64
30
52
41
1
0
56
1.12
263185--263233
18
2.8
18
85
11
59
40
2
0
57
1.10
263194--263349
5
31.4
5
67
20
87
41
1
0
57
1.12
263187--263349
16
10.1
17
70
23
113
41
1
0
57
1.11
263208--263349
32
4.3
33
79
15
136
41
0
0
57
1.09
263208--263341
69
1.9
73
83
9
179
41
0
0
56
1.10
263213--263315
27
3.7
26
75
22
86
42
0
0
55
1.13
263304--263369
23
2.7
25
79
6
73
40
3
0
56
1.15
263496--263525
15
2.0
15
93
0
51
36
0
0
63
0.95
263615--263641
12
2.2
12
100
0
54
22
0
0
77
0.76
264132--264183
28
1.9
26
84
7
68
48
1
0
50
1.12
263772--264385
323
1.9
320
86
4
878
41
4
5
49
1.46
265699--265724
6
4.3
6
100
0
52
50
15
19
15
1.79
265768--265831
27
2.4
28
81
7
78
26
18
42
12
1.86
265780--265837
27
2.1
27
87
0
80
27
17
43
12
1.84
275500--275546
18
2.4
19
82
10
60
34
0
0
65
0.93
275505--275546
17
2.3
19
80
12
52
33
0
0
66
0.92
275860--275900
20
2.0
20
85
0
55
58
2
2
36
1.24
276195--276233
20
2.0
20
89
0
60
58
7
5
28
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
291291--291367
1
77.0
1
75
0
55
85
7
3
2
0.80
291291--291335
11
4.3
11
88
8
67
91
6
0
2
0.50
291291--291359
10
6.7
10
79
15
70
85
8
2
2
0.80
291290--291362
29
2.4
29
82
8
85
84
9
2
2
0.81
292549--293622
28
37.5
28
84
7
1090
27
30
18
23
1.97
294257--294307
20
2.6
19
72
9
57
35
11
15
37
1.84
294230--294307
40
2.0
39
82
2
93
33
11
14
41
1.81
297749--297791
22
2.1
22
87
12
65
41
0
0
58
0.98
299877--300114
51
4.6
51
80
6
266
30
26
10
32
1.90
299877--300114
102
2.3
103
85
7
315
30
26
10
32
1.90
300098--300170
27
2.7
27
82
6
85
26
30
20
23
1.99
300125--300392
79
3.4
79
82
5
317
26
23
14
35
1.94
312537--312578
21
2.0
21
95
0
75
40
9
21
28
1.84
312565--312590
13
2.0
13
100
0
52
30
15
15
38
1.88
314943--315181
51
4.6
51
80
7
268
30
26
10
31
1.90
314943--315181
102
2.3
103
84
4
313
30
26
10
31
1.90
315164--315236
27
2.7
27
86
2
92
23
35
21
19
1.96
315188--315444
79
3.2
80
86
5
310
26
25
14
33
1.95
316937--316981
2
23.0
2
95
4
83
48
0
0
51
1.00
317243--317276
14
2.5
14
90
4
52
29
0
0
70
0.87
317244--317291
22
2.2
22
85
10
64
33
0
0
66
0.92
320042--320131
17
4.7
18
69
24
60
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
320016--320148
58
2.3
59
85
7
166
58
0
1
39
1.07
320057--320151
32
3.6
25
73
22
86
57
0
0
42
0.98
320068--320135
32
2.1
33
88
2
102
58
0
0
41
0.98
320033--320148
58
2.0
61
89
5
184
61
0
0
38
0.96
320753--320778
2
13.0
2
100
0
52
50
0
0
50
1.00
320835--320900
22
3.0
22
76
10
64
56
0
3
40
1.15
320841--320900
23
2.7
23
82
14
72
58
0
1
40
1.08
320850--320940
28
3.4
27
78
15
100
51
0
5
42
1.25
320888--320929
22
2.0
21
85
4
57
47
0
7
45
1.30
322593--322650
23
2.4
25
80
13
68
36
1
1
60
1.17
323286--323332
17
2.7
18
86
6
60
38
4
2
55
1.31
325316--325368
26
2.0
26
100
0
106
26
7
18
47
1.75
329700--329732
4
8.2
4
100
0
66
75
0
0
24
0.80
330557--330750
107
1.8
107
86
2
282
33
13
8
44
1.75
331275--331304
3
10.0
3
100
0
60
66
0
0
33
0.92

Tables:   1   2   3

The End!