genome.fa.s236.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold236
Parameters: 2 7 7 80 10 50 1000
Length:  248862

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198395--198561	76	2.2	78	83	3	212	26	25	16	32	1.96
198550--198750	79	2.5	79	82	3	215	26	24	16	32	1.96
198707--198780	28	2.7	26	80	14	69	22	24	20	32	1.98
198395--198830	188	2.3	180	78	7	444	27	24	14	33	1.95
198769--198910	51	2.8	51	87	6	216	31	24	8	35	1.85
198767--198928	51	3.2	51	80	11	181	31	24	9	34	1.88
204031--204653	120	5.2	120	84	2	750	27	27	17	26	1.98
204052--204647	181	3.3	179	82	5	650	27	28	17	26	1.97
204031--204655	61	10.4	60	82	4	679	27	28	18	26	1.98
204662--204784	42	2.9	42	84	2	140	21	21	13	43	1.86
205428--205475	20	2.4	20	96	0	87	29	10	12	47	1.74
207801--208246	79	5.7	78	80	4	414	29	22	12	34	1.91
207819--208305	158	3.1	156	79	4	485	29	22	12	35	1.91
207819--208250	158	2.7	156	80	4	490	30	22	12	35	1.91
208586--208628	22	2.0	22	100	0	86	23	23	25	27	2.00
211319--211344	13	2.0	13	100	0	52	23	0	7	69	1.14
215708--215733	13	2.0	13	100	0	52	38	15	15	30	1.88
215686--215753	33	2.1	32	88	2	100	33	14	16	35	1.89
215825--215853	13	2.2	13	100	0	58	37	13	17	31	1.89
215839--215889	20	2.5	20	87	6	68	33	17	15	33	1.92
216404--216447	21	2.0	22	86	4	63	31	27	2	38	1.69
218300--218337	13	2.9	13	96	0	67	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224476--224501	13	2.0	13	100	0	52	38	15	15	30	1.88
224454--224521	33	2.1	32	91	2	109	35	14	14	35	1.87
224553--224605	20	2.6	21	84	3	72	28	16	15	39	1.89
224595--224619	13	1.9	13	100	0	50	44	16	16	24	1.86
227563--227602	21	1.9	21	85	10	55	50	0	5	45	1.23
235365--235418	25	2.2	25	96	0	99	20	25	33	20	1.97
236639--236688	20	2.5	20	80	0	64	36	28	8	28	1.85
242485--242522	20	1.9	20	94	0	67	42	10	15	31	1.81
242559--242631	20	3.7	19	81	7	92	38	12	15	34	1.84
242435--242611	70	2.5	73	88	2	252	41	12	15	29	1.84
242485--242662	90	2.0	91	86	3	252	41	13	16	29	1.86
242615--242673	31	1.9	31	96	0	109	47	11	16	23	1.80
243388--243644	48	5.4	48	90	1	342	35	15	27	21	1.94
243388--243605	95	2.3	97	91	1	341	35	15	28	20	1.93
243753--244332	28	20.5	28	84	3	653	23	17	29	29	1.97
245599--245651	10	5.0	10	81	9	61	1	1	15	81	0.87
245590--245625	18	1.9	19	88	5	56	2	0	11	86	0.68
245591--245649	23	2.6	23	84	10	84	1	1	11	84	0.77

Tables:   1   2   3

The End!