genome.fa.s2422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2422
Parameters: 2 7 7 80 10 50 1000
Length:  193378

Tables:   1   2   

This is table  1  of  2  ( 138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581--624	20	2.2	20	84	12	54	81	0	15	2	0.78
581--622	22	2.0	21	85	4	57	80	0	16	2	0.81
1137--1266	39	3.4	39	87	8	187	27	3	22	46	1.69
1151--1261	35	3.0	36	90	5	161	24	2	24	48	1.64
1755--1785	16	1.9	16	100	0	62	25	0	0	74	0.82
1756--1794	16	2.5	16	87	4	53	25	0	2	71	0.98
9151--9191	21	2.0	21	100	0	82	19	29	9	41	1.83
9473--9502	2	15.0	2	100	0	60	50	50	0	0	1.00
10803--10835	14	2.3	15	89	5	50	36	0	3	60	1.12
11462--11532	32	2.2	33	82	2	81	32	0	8	59	1.28
12547--12579	12	2.8	12	86	4	50	27	0	3	69	1.03
12905--12994	30	3.3	27	71	17	78	41	1	0	57	1.06
13582--13622	12	3.4	13	80	16	52	46	0	0	53	1.00
14129--14190	2	31.0	2	100	0	124	50	0	0	50	1.00
14770--14894	20	5.7	20	74	18	106	30	17	12	40	1.86
15965--15996	16	2.0	16	100	0	64	31	12	31	25	1.92
17719--17744	13	2.0	13	100	0	52	38	15	15	30	1.88
17701--17764	33	2.0	32	90	3	101	39	20	14	26	1.90
22940--23060	52	2.3	52	97	0	224	28	18	18	34	1.94
22940--23080	52	2.7	51	90	4	212	30	17	18	33	1.94
23069--23093	13	1.9	13	100	0	50	36	16	16	32	1.90
23158--23182	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23136--23202	33	2.0	33	88	0	98	40	13	11	34	1.81
23922--24553	49	13.0	49	87	6	874	32	17	25	23	1.97
23922--24565	242	2.6	243	92	3	1066	32	17	26	24	1.97
24570--24632	33	1.9	33	100	0	126	15	19	36	28	1.92
24639--24894	33	7.9	33	81	13	291	33	12	32	21	1.91
24739--24918	62	3.0	58	81	11	195	31	13	31	23	1.93
24740--24918	33	6.0	28	78	16	182	30	13	31	23	1.94
24740--24903	89	1.8	89	96	2	303	32	14	31	21	1.93
26362--26454	1	93.0	1	77	0	69	2	2	9	86	0.75
26362--26455	22	4.6	20	77	15	86	2	2	10	85	0.78
26363--26454	32	2.9	31	84	10	107	2	2	9	85	0.76
26362--26455	15	6.0	15	80	10	91	2	2	10	85	0.78
30028--30058	1	31.0	1	100	0	62	100	0	0	0	0.00
36167--36193	10	2.7	10	100	0	54	77	22	0	0	0.76
40327--40447	52	2.3	52	97	0	224	28	18	18	34	1.94
40327--40467	52	2.7	51	90	4	212	30	17	18	33	1.94
40456--40480	13	1.9	13	100	0	50	36	16	16	32	1.90
40545--40569	13	1.9	13	100	0	50	32	16	16	36	1.90
40523--40589	33	2.0	33	88	0	98	40	13	11	34	1.81
48080--48670	156	3.8	153	77	9	528	41	18	12	27	1.87
49592--49648	29	1.9	30	85	7	80	43	14	5	36	1.67
51568--51593	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51550--51613	32	2.0	33	90	3	103	42	15	14	28	1.86
51922--51955	17	2.0	17	100	0	68	17	11	17	52	1.73
52380--52723	154	2.2	153	82	1	429	49	7	9	33	1.64
56097--56132	19	1.9	18	88	5	54	58	0	0	41	0.98
56871--56913	18	2.2	19	84	12	52	46	4	2	46	1.36
56901--56937	14	2.6	14	82	0	56	56	2	0	40	1.13
56932--56968	17	2.2	16	90	4	56	59	2	2	35	1.26
56932--57000	16	4.2	16	77	20	72	57	1	1	39	1.16
64562--64793	116	2.0	116	88	1	340	33	22	12	31	1.92
65006--65051	17	2.7	18	83	13	69	36	2	0	60	1.09
66679--66713	6	5.8	6	96	0	52	0	40	8	51	1.33
66678--66716	12	3.2	12	88	0	60	0	41	7	51	1.31
66678--66716	6	6.5	6	93	0	51	0	41	7	51	1.31
67411--67487	33	2.2	36	80	13	90	41	3	0	54	1.19
68100--68130	12	2.6	12	94	0	53	51	3	6	38	1.44
69362--69402	16	2.6	16	88	0	55	48	29	19	2	1.61
69373--69413	16	2.6	16	92	0	64	41	34	21	2	1.67
71668--71698	16	1.9	16	93	0	53	32	41	22	3	1.70
72750--72801	11	4.9	10	82	15	61	40	0	1	57	1.10
72749--72795	23	2.0	23	88	8	69	40	0	2	57	1.11
73176--73241	16	4.1	16	79	14	73	36	34	16	12	1.86
77683--77742	29	2.1	29	84	6	77	35	10	8	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83744--83780	18	2.1	18	90	5	58	8	13	5	72	1.24
93514--93819	152	2.0	152	98	0	585	28	17	18	34	1.94
93843--93970	64	2.0	66	86	6	181	32	7	22	37	1.83
104111--104190	30	2.7	30	78	0	79	32	22	8	36	1.85
105019--105048	3	10.3	3	92	7	53	30	0	0	70	0.88
112439--112478	18	2.2	18	90	0	62	50	0	2	47	1.14
112624--112667	12	4.1	11	77	16	56	59	0	0	40	0.98
112625--112665	20	2.0	20	90	9	64	56	0	0	43	0.99
114446--114485	3	13.3	3	100	0	80	35	0	0	65	0.93
114801--114832	3	10.7	3	93	0	55	0	37	0	62	0.95
115645--115691	21	2.5	18	80	13	51	61	0	0	38	0.96
115738--115768	15	2.1	15	100	0	62	61	0	6	32	1.21
116160--116249	22	4.1	22	73	18	82	36	0	2	61	1.09
116238--116308	27	2.5	28	77	11	81	49	1	0	49	1.09
116243--116294	24	2.1	25	82	3	61	53	0	0	46	1.00
116285--116348	22	2.8	22	76	15	58	37	1	0	60	1.06
116309--116356	22	2.1	23	81	14	55	37	0	2	60	1.09
116187--116373	103	1.8	103	87	6	281	43	0	2	54	1.16
116265--116591	130	2.6	127	89	7	497	42	0	0	55	1.12
116412--116479	24	3.1	22	80	13	70	39	0	0	60	0.97
116522--116643	64	1.9	66	85	10	171	46	0	0	51	1.12
116743--116789	24	2.0	25	84	16	64	44	4	2	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117699--117754	8	6.9	8	78	10	60	48	1	0	50	1.11
118444--118545	23	4.4	23	75	14	93	40	2	2	53	1.31
118539--118618	42	1.9	42	85	7	110	46	6	6	41	1.54
123767--123793	4	6.8	4	100	0	54	77	0	0	22	0.76
123838--123871	2	17.5	2	87	6	52	52	0	0	47	1.00
129601--129656	29	1.9	29	92	0	94	42	0	0	57	0.99
129606--129655	15	3.4	15	71	15	50	38	0	0	62	0.96
130041--130083	22	1.9	22	86	13	61	53	0	0	46	1.00
130537--130570	12	2.8	12	90	0	50	8	41	0	50	1.34
134939--134973	2	17.5	2	87	0	52	48	2	2	45	1.32
136223--136247	6	4.2	6	100	0	50	84	0	0	16	0.63
136837--136874	19	1.9	20	84	10	51	71	0	5	23	1.07
142198--142226	14	2.0	15	93	6	51	89	0	10	0	0.48
150556--150635	26	3.1	26	98	0	151	31	12	22	33	1.91
154271--154296	3	8.7	3	100	0	52	69	0	0	30	0.89
154295--154326	3	10.7	3	100	0	64	68	0	31	0	0.90
155514--155570	18	3.0	19	82	12	64	43	0	1	54	1.10
157259--157356	33	3.0	33	82	5	110	29	12	14	43	1.81
157312--157338	13	2.1	13	100	0	54	29	7	14	48	1.71
157427--157451	13	1.9	13	100	0	50	32	16	16	36	1.90
157932--158029	7	14.0	7	100	0	196	14	0	42	42	1.45
159366--159436	28	2.5	28	82	8	83	26	16	33	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159424--159592	52	3.3	50	81	5	185	32	11	26	28	1.92
159459--159592	51	2.6	51	82	4	153	34	12	26	26	1.92
159525--159704	80	2.3	80	88	2	256	29	15	29	25	1.96
159657--159734	27	2.9	27	88	5	113	25	17	33	23	1.96
162240--162406	32	5.2	32	99	0	325	35	18	12	33	1.89
163710--163777	34	2.0	34	97	0	127	20	13	23	42	1.87
170337--170378	21	2.0	21	86	13	61	45	14	16	23	1.84
171221--171349	52	2.5	52	98	0	249	28	17	17	35	1.93
171392--171456	33	2.0	33	90	3	105	40	16	10	32	1.84
172207--172721	48	10.6	49	82	5	582	31	17	25	24	1.97

Tables:   1   2