genome.fa.s2436.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2436
Parameters: 2 7 7 80 10 50 1000
Length:  265143

Tables:   1   2   

This is table  2  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160124--160365	129	1.9	128	80	0	286	21	29	11	36	1.90
155171--183738	126	226.1	125	70	8	5757	18	25	16	38	1.91
162023--162333	170	1.8	172	81	4	387	21	26	16	36	1.94
162696--163136	170	2.6	170	78	7	414	20	29	15	34	1.94
165061--165248	85	2.2	84	83	5	227	21	25	14	38	1.91
166732--166843	45	2.6	45	80	5	124	12	23	20	43	1.85
166891--167055	43	3.9	43	74	7	122	18	26	16	38	1.92
168073--168288	85	2.6	84	85	2	263	19	27	15	37	1.92
168354--168584	129	1.8	127	80	5	277	22	27	12	38	1.90
170231--170437	83	2.5	83	79	3	220	21	27	14	37	1.92
172368--173585	619	2.0	619	83	5	1534	19	26	16	37	1.93
173184--173545	169	2.1	169	80	6	394	18	25	17	38	1.92
173165--173559	127	3.1	126	75	9	340	19	25	16	37	1.93
174204--174747	254	2.1	255	85	2	718	18	25	15	40	1.90
175435--175645	86	2.5	86	77	2	210	19	25	15	39	1.90
175492--175673	86	2.1	86	79	0	184	18	26	15	38	1.91
175694--175906	83	2.6	83	78	1	239	16	22	16	44	1.86
176407--176648	86	2.8	83	78	5	207	18	24	17	40	1.91
176228--176700	256	1.8	257	81	3	585	18	24	16	39	1.91
178355--178833	209	2.3	210	79	4	484	18	26	15	39	1.91
180241--180475	85	2.8	85	79	4	224	19	27	15	38	1.91
179994--183502	170	20.6	168	70	9	799	18	26	16	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180500--180859	166	2.2	168	81	4	413	18	26	16	39	1.91
175641--183738	251	31.9	249	71	8	1470	18	25	16	39	1.91
181682--181994	171	1.8	170	80	4	380	19	26	14	38	1.90
181996--182317	129	2.5	125	79	9	305	17	27	17	37	1.92
181396--183738	125	18.5	126	73	7	1157	17	26	16	39	1.91
182672--182902	128	1.8	127	83	4	313	18	26	16	38	1.92
182857--183219	43	8.5	43	76	9	152	17	26	16	39	1.90
182811--183640	214	3.9	214	75	8	570	17	26	17	38	1.92
181295--183707	932	2.6	926	80	4	2611	17	26	16	39	1.91
184278--184323	15	3.1	14	87	9	65	73	2	0	23	0.94
184294--184339	24	1.9	24	86	8	67	73	2	0	23	0.94
185919--185975	30	1.9	30	85	7	80	52	10	15	21	1.72
188767--188804	19	2.0	20	94	5	69	36	10	13	39	1.79
189400--189549	64	2.3	64	78	8	153	36	18	15	30	1.92
190331--190360	13	2.3	13	94	0	51	40	13	16	30	1.87
197609--197650	20	2.2	18	87	8	57	45	21	4	28	1.72
203584--203637	20	2.7	20	88	5	74	38	18	11	31	1.86
203665--203722	19	3.1	18	83	11	80	34	15	15	34	1.89
203706--203732	13	2.1	13	100	0	54	40	14	14	29	1.86
203687--203751	33	2.0	32	87	3	94	41	15	13	29	1.86
205566--205671	34	3.0	34	80	12	124	42	1	24	31	1.65
207784--208174	87	4.5	87	78	6	391	42	11	18	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207784--208105	169	1.9	168	83	3	423	41	10	19	28	1.84
208514--208555	14	2.9	14	85	3	57	19	0	0	80	0.70
209460--209496	6	5.7	7	84	15	53	10	10	0	78	0.97
209408--209478	16	4.2	17	73	18	67	12	14	1	71	1.21
213587--213641	20	2.8	20	83	8	67	36	14	9	40	1.78
213657--213733	20	3.9	19	82	0	82	44	14	11	29	1.80
213537--213713	72	2.5	71	85	4	232	40	14	13	31	1.85
214578--214686	32	3.2	32	77	10	92	27	16	24	31	1.96
214641--215708	85	12.5	84	85	5	1293	23	17	30	29	1.97
214641--215708	28	37.5	28	84	5	1293	23	17	30	29	1.97
216069--216120	27	1.9	27	84	0	68	26	21	19	32	1.97
216938--217030	17	5.1	17	72	19	62	1	5	10	82	0.87
216938--217030	36	2.6	35	77	12	100	1	5	10	82	0.87
216938--217031	38	2.4	39	81	12	104	1	5	11	81	0.89
230130--230194	33	1.9	34	90	3	105	33	10	16	38	1.84
234582--234767	20	8.8	20	72	16	142	41	14	15	29	1.86
234580--234767	40	4.4	40	72	15	162	42	14	14	28	1.85
234600--234778	91	2.0	91	92	0	295	41	14	15	27	1.86
235889--235919	2	15.5	2	100	0	62	51	0	0	48	1.00
239030--239091	29	2.1	29	85	14	83	46	12	8	32	1.71
239038--239110	29	2.6	27	79	18	69	49	12	8	30	1.69
240172--240452	154	1.8	154	81	7	347	50	10	8	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243969--244007	20	2.0	20	89	0	60	43	10	15	30	1.80
252529--252574	24	1.9	24	95	0	83	32	17	13	36	1.88
252559--252643	28	3.0	28	84	0	107	38	16	9	35	1.81
253825--253880	19	2.8	20	86	2	78	32	16	14	37	1.88
253821--253881	20	3.1	19	79	6	77	34	14	14	36	1.87
253930--253954	13	1.9	13	100	0	50	36	16	16	32	1.90
260832--260877	13	3.5	13	82	5	65	34	13	15	36	1.86
260834--260874	14	3.0	14	89	7	66	36	12	14	36	1.84

Tables:   1   2

The End!