genome.fa.s2547.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2547
Parameters: 2 7 7 80 10 50 1000
Length:  500834

Tables:   1   2   3   

This is table  3  of  3  ( 296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379636--379660	13	1.9	13	100	0	50	36	16	16	32	1.90
382336--382373	20	1.9	20	94	0	67	42	7	18	31	1.79
382888--427550	474	93.5	474	74	9	24296	31	18	13	36	1.90
384778--387799	158	19.1	158	64	13	554	30	19	14	35	1.91
391995--392795	401	2.0	400	91	0	1280	32	17	11	37	1.87
396936--397649	364	2.0	363	81	5	834	32	19	13	35	1.90
397300--427550	475	63.7	474	78	6	24455	31	18	14	36	1.90
419242--420221	508	1.9	509	85	1	1347	32	18	13	35	1.90
420725--421054	157	2.1	158	83	6	411	29	19	14	36	1.92
420742--421111	157	2.4	157	80	5	374	29	18	14	37	1.90
420249--421525	634	2.0	632	84	4	1644	32	17	12	37	1.88
419774--422883	158	19.6	157	66	12	645	31	18	13	36	1.89
426085--426767	158	4.3	156	66	17	384	31	18	13	35	1.90
427501--431571	475	8.7	472	81	5	3972	32	18	14	35	1.90
429682--431601	476	4.1	475	83	4	2322	32	19	14	34	1.91
432557--432582	13	2.0	13	100	0	52	38	15	15	30	1.88
432539--432602	32	2.0	33	90	3	103	42	15	14	28	1.86
433041--433107	37	1.9	35	88	11	102	32	11	25	29	1.92
434630--434790	84	1.9	84	80	9	186	53	3	17	25	1.60
436321--436345	13	1.9	13	100	0	50	36	16	16	32	1.90
437160--437227	30	2.2	32	89	5	104	29	4	29	36	1.77
438341--438366	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438323--438386	32	2.0	33	90	3	103	42	15	14	28	1.86
438825--438891	37	1.9	35	88	11	102	32	11	25	29	1.92
439142--448033	476	18.7	475	85	3	11257	31	18	14	35	1.91
449682--450022	159	2.2	157	89	2	504	34	18	14	32	1.91
448032--449937	475	4.0	475	84	3	2460	32	18	14	35	1.90
450353--454556	472	8.9	476	87	2	5898	35	13	18	32	1.90
450353--454556	947	4.4	948	88	2	5927	35	13	18	32	1.90
454530--454567	20	1.9	20	100	0	76	28	5	26	39	1.78
456791--456816	13	2.0	13	100	0	52	38	15	15	30	1.88
456773--456836	32	2.0	33	87	3	94	40	17	14	28	1.88
459037--459086	21	2.3	21	80	10	57	56	4	18	22	1.58
460884--460914	15	2.1	15	93	0	53	48	16	22	12	1.80
462993--463018	13	2.0	13	100	0	52	30	15	15	38	1.88
463140--463185	21	2.2	20	81	11	58	32	19	4	43	1.71
465563--465588	13	2.0	13	100	0	52	38	15	15	30	1.88
465545--465608	32	2.0	33	84	3	85	42	15	14	28	1.86
466342--469683	475	7.1	472	82	4	3813	32	18	14	35	1.90
471279--471410	42	3.1	42	89	2	185	44	2	44	8	1.46
475783--476026	122	2.0	122	98	0	470	31	12	25	31	1.92
476477--480396	476	8.3	476	83	3	4704	32	18	14	35	1.91
480017--480839	441	1.9	441	86	3	1174	31	18	14	35	1.91
480719--481228	258	2.0	258	85	2	684	31	19	14	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480973--489746	476	18.4	474	84	3	10259	32	18	13	35	1.90
480973--489746	953	9.2	949	83	3	10514	32	18	13	35	1.90
489417--490062	315	2.0	317	86	1	904	31	18	13	36	1.90
489995--490733	382	1.9	382	84	3	988	32	17	13	35	1.90
490377--492881	475	5.2	475	82	5	2874	32	18	13	35	1.90
493655--493680	13	2.0	13	100	0	52	30	15	15	38	1.88
495559--495602	21	2.1	21	83	8	54	25	31	4	38	1.76
496900--496955	21	2.8	20	83	5	76	37	16	14	32	1.88
497247--497361	20	5.7	20	79	4	140	36	13	20	30	1.90
497265--497381	21	5.7	21	79	4	148	40	11	18	29	1.87
497247--497381	41	3.3	41	100	0	270	38	12	19	29	1.88
497420--497445	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3

The End!