genome.fa.s266.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold266
Parameters: 2 7 7 80 10 50 1000
Length:  372371

Tables:   1   2   3   

This is table  3  of  3  ( 296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300355--300704	174	2.0	175	95	1	630	48	4	5	41	1.47
300867--300935	17	3.7	17	78	18	59	50	1	1	46	1.19
300534--300935	197	2.0	198	79	6	431	48	3	5	42	1.45
300882--300927	21	2.5	17	86	13	56	50	2	0	47	1.13
300882--300931	19	2.7	17	80	17	55	52	2	0	46	1.12
306312--306361	25	2.1	25	85	7	68	56	12	4	28	1.54
306889--307012	52	2.4	51	82	6	142	24	19	20	36	1.95
307060--307368	51	6.0	50	72	6	177	23	16	23	35	1.95
307198--307387	104	1.8	104	85	2	265	24	17	24	34	1.96
310737--310761	12	2.1	12	100	0	50	48	8	0	44	1.32
312189--312234	17	2.7	17	75	0	56	56	8	8	26	1.58
312187--312308	54	2.2	54	82	1	145	60	12	4	22	1.50
312224--312459	75	3.1	74	76	11	246	61	12	4	21	1.47
312275--312328	21	2.6	21	88	2	83	70	9	1	18	1.23
312533--312588	17	3.2	17	75	5	67	19	7	12	60	1.55
312548--312842	106	2.8	104	80	8	276	20	7	10	62	1.49
312796--312848	20	2.7	21	77	11	58	24	3	0	71	1.02
313021--313075	28	2.0	28	89	3	85	50	5	7	36	1.53
313021--313099	29	2.8	28	84	3	88	50	5	5	39	1.46
314024--314063	19	2.1	19	86	9	55	65	0	2	32	1.06
314963--315079	16	7.3	15	74	12	76	53	9	4	32	1.52
317289--317328	18	2.2	18	90	0	62	60	7	30	2	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320868--320897	11	2.6	12	89	10	53	0	20	0	80	0.72
329811--330031	110	2.0	110	82	3	266	31	22	15	30	1.95
329969--330115	28	5.3	28	75	8	113	29	21	21	28	1.98
332445--332764	78	4.1	78	80	7	308	34	11	23	29	1.91
332637--332894	130	2.0	131	86	2	367	34	11	24	29	1.91
334809--334842	18	1.9	18	94	5	61	8	14	29	47	1.75
338019--339377	690	2.0	688	95	1	2425	42	10	15	31	1.81
345319--345343	13	1.9	13	100	0	50	36	16	16	32	1.90
345299--345365	33	2.0	33	85	0	89	34	11	13	40	1.81
345385--345464	34	2.4	34	100	0	160	35	17	12	35	1.88
345384--345464	13	7.1	12	71	28	70	35	17	12	34	1.87
345473--345601	52	2.5	52	93	0	222	34	17	18	30	1.94
353220--353273	19	2.8	20	91	2	83	40	18	11	29	1.85
358425--358464	19	2.1	19	86	9	55	60	10	0	30	1.30
361569--361658	25	3.6	25	72	11	94	50	10	5	34	1.59
361379--361682	125	2.5	121	82	10	343	42	10	9	37	1.72
361610--361955	73	4.8	73	78	4	333	38	9	10	41	1.74
361618--361960	146	2.4	144	81	6	381	38	9	11	40	1.73
361909--362007	52	1.9	52	85	0	135	45	12	12	30	1.78
362979--363060	28	2.9	28	80	7	96	26	17	31	24	1.97
363043--363213	51	3.3	51	78	4	189	32	11	26	28	1.92
363196--363271	27	2.8	28	88	6	102	21	21	34	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365684--365709	13	2.0	13	100	0	52	38	15	15	30	1.88
365663--365727	33	2.0	33	87	0	94	43	15	15	26	1.86
365749--365816	19	3.9	18	76	23	83	38	14	11	35	1.83
365771--365795	13	1.9	13	100	0	50	32	16	16	36	1.90
365752--365814	32	2.0	32	96	0	117	36	15	12	34	1.86
365872--365924	21	2.5	21	96	0	97	37	18	11	32	1.87
366545--367057	55	9.3	54	92	3	764	20	20	30	28	1.98
366646--366735	26	3.3	26	68	14	74	20	17	33	28	1.95
366676--366764	29	3.2	29	67	20	89	19	19	33	28	1.96
368041--368102	14	4.8	12	79	15	61	0	8	6	85	0.74
368041--368105	16	3.9	16	77	15	60	0	7	7	84	0.77
368064--368105	16	2.8	15	92	7	68	0	9	4	85	0.72

Tables:   1   2   3

The End!