genome.fa.s266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold266
Parameters: 2 7 7 80 10 50 1000
Length:  372371

Tables:   1   2   3   

This is table  1  of  3  ( 296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237--295	24	2.5	23	81	8	73	50	0	1	47	1.11
239--299	25	2.4	25	72	8	61	47	0	1	50	1.10
2497--2536	21	1.9	21	89	0	62	62	7	2	27	1.35
7134--7159	3	8.7	3	100	0	52	69	0	0	30	0.89
7523--7579	25	2.3	25	84	3	89	57	3	0	38	1.16
9175--9204	13	2.3	13	100	0	60	40	6	33	20	1.78
9274--9319	24	1.9	24	90	0	74	43	28	6	21	1.77
9324--9378	28	2.0	28	92	0	92	49	18	10	21	1.78
9398--9443	19	2.4	19	96	0	83	39	32	17	10	1.84
13907--13952	24	1.9	24	81	0	56	43	21	8	26	1.81
15261--15488	34	7.4	34	75	22	252	40	39	0	19	1.52
15290--15435	22	6.5	22	78	18	151	39	40	0	19	1.52
15262--15435	56	3.1	56	87	10	241	40	39	0	19	1.52
15261--15488	90	2.5	90	100	0	456	40	39	0	19	1.52
15290--15462	56	3.1	55	88	6	226	38	41	0	20	1.52
20156--20383	34	7.4	34	75	22	252	40	39	0	19	1.52
20185--20330	22	6.5	22	78	18	151	39	40	0	19	1.52
20157--20330	56	3.1	56	87	10	241	40	39	0	19	1.52
20156--20383	90	2.5	90	100	0	456	40	39	0	19	1.52
20185--20357	56	3.1	55	88	6	226	38	41	0	20	1.52
21674--21703	8	3.6	8	91	8	51	0	13	0	86	0.57
21675--21703	9	3.3	9	90	9	51	0	10	0	89	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22914--22957	21	2.0	21	86	4	61	18	4	6	70	1.27
33984--34065	41	2.0	41	83	9	105	39	7	20	32	1.80
35031--35058	4	7.0	4	100	0	56	25	0	0	75	0.81
40344--40368	2	12.5	2	100	0	50	52	0	0	48	1.00
40309--40509	106	1.9	104	82	8	246	38	13	11	36	1.81
42490--42542	25	2.1	25	82	6	63	33	3	7	54	1.46
50478--50556	27	2.9	27	90	1	113	30	30	13	25	1.94
50490--50754	28	9.4	27	83	6	120	31	30	16	21	1.96
50497--55730	56	91.9	56	79	8	4812	30	27	16	24	1.97
50583--55730	84	60.2	84	80	7	5009	30	27	16	24	1.97
50560--51023	28	16.0	28	81	10	470	30	28	17	23	1.97
50985--51062	39	2.0	39	92	0	129	26	28	21	23	1.99
51024--51249	28	8.0	28	82	3	258	30	30	15	23	1.96
51258--51465	28	7.5	28	83	6	262	31	28	16	23	1.96
51427--51504	39	2.0	39	92	0	129	26	28	21	23	1.99
51466--51897	28	15.4	28	82	5	489	30	28	16	24	1.96
51859--51936	39	2.0	39	92	0	129	26	28	21	23	1.99
51911--55730	28	135.5	28	82	3	3848	30	27	16	24	1.97
55887--55961	25	3.2	25	68	14	77	21	28	18	32	1.97
55844--56055	48	4.5	47	89	1	259	20	26	18	33	1.96
55869--55938	21	3.1	22	69	15	70	22	28	15	32	1.95
55844--56055	94	2.3	92	84	4	255	20	26	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56753--56918	20	8.8	19	70	17	123	31	14	12	41	1.83
56792--56968	51	3.7	48	75	16	181	30	15	10	43	1.80
56742--56968	91	2.5	92	92	1	377	29	15	11	42	1.82
56927--56968	20	2.0	20	90	4	66	30	16	9	42	1.80
60613--60669	22	2.5	23	80	5	71	40	15	7	36	1.75
62053--62134	41	2.0	41	83	9	105	39	7	20	32	1.80
65853--68010	28	76.0	29	81	7	2100	30	28	16	24	1.96
65853--68010	56	38.0	56	83	5	2364	30	28	16	24	1.96
68167--68241	25	3.2	25	64	14	68	20	25	20	34	1.96
68128--68294	46	3.6	45	84	6	201	22	25	17	34	1.96
68162--68334	93	1.8	94	87	2	258	20	26	19	34	1.96
68162--68334	47	3.7	47	86	3	224	20	26	19	34	1.96
69032--69219	20	8.9	20	78	16	166	30	15	13	40	1.85
69052--69105	12	5.2	12	68	32	52	35	11	18	35	1.86
69052--69271	91	2.4	93	93	3	363	29	15	13	41	1.85
74099--74180	41	2.0	41	83	9	105	39	7	20	32	1.80
77894--77924	15	2.1	15	100	0	62	32	6	25	35	1.82
90655--90697	9	4.7	9	82	5	50	72	0	16	11	1.13
90663--90698	19	1.9	18	88	5	54	72	0	19	8	1.10
92223--92251	14	2.1	14	100	0	58	55	6	6	31	1.53
93948--93977	15	2.0	15	100	0	60	46	13	0	40	1.43
94125--94170	22	2.1	22	84	8	58	45	4	2	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94268--94294	2	13.5	2	100	0	54	51	0	0	48	1.00
94327--94386	25	2.5	24	84	7	70	60	0	0	40	0.97
94336--94416	30	2.8	30	81	9	89	58	0	0	41	0.98
94336--94404	14	4.6	14	73	10	57	55	0	0	44	0.99
94350--94431	22	3.6	23	74	20	66	58	0	0	41	0.98
94327--94411	24	3.4	25	73	17	70	57	0	0	42	0.98
94729--94799	6	13.2	5	79	18	56	42	0	0	57	0.98
94729--94800	11	6.6	11	73	20	62	43	0	0	56	0.99
94729--94809	16	5.0	16	74	19	62	43	0	0	56	0.99
94729--94836	54	2.0	54	80	10	123	44	0	0	55	0.99
95748--95777	6	4.8	6	95	4	51	20	0	0	80	0.72
98382--98491	34	3.2	34	84	2	148	35	33	5	25	1.79
98467--98546	26	3.4	23	85	10	108	36	33	5	25	1.78
98498--98544	14	3.5	14	77	11	62	34	34	4	27	1.77
98512--98558	12	3.8	12	78	10	58	38	38	2	21	1.65
98479--98556	26	3.2	26	92	7	128	35	33	3	26	1.75
98538--98605	22	3.1	22	82	2	84	39	35	2	22	1.69
103299--103416	34	3.4	34	88	2	173	35	37	4	22	1.74
103372--103396	12	2.1	12	100	0	50	40	52	0	8	1.31
103384--103438	22	2.5	22	87	0	83	36	36	3	23	1.73
105949--106030	18	4.5	18	79	1	83	42	13	7	36	1.72
105953--106030	36	2.1	35	83	6	102	44	12	7	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107640--107689	26	1.9	26	95	0	91	10	22	8	60	1.55
108699--108826	19	7.4	17	72	10	73	42	11	8	36	1.72
108736--108826	37	2.5	37	89	5	132	42	13	7	36	1.72
109887--109916	14	2.1	15	93	6	53	23	6	0	70	1.11
110860--110905	23	2.0	23	83	8	58	39	21	8	30	1.84
112222--112291	31	2.2	33	89	5	108	54	7	10	28	1.60
113994--114069	33	2.2	33	83	4	89	36	17	18	27	1.93
119987--120115	52	2.5	52	96	0	231	28	17	17	35	1.93
119987--120135	52	2.9	52	90	2	183	30	16	17	34	1.93
120170--120267	19	5.8	18	71	28	90	36	17	12	33	1.87
120189--120245	13	3.9	13	76	24	60	33	17	14	35	1.90
120168--120265	32	3.0	32	96	1	178	35	17	12	34	1.87
122590--122615	13	2.0	13	100	0	52	38	15	15	30	1.88
122660--122711	13	3.5	13	73	26	50	36	17	13	32	1.89
126969--127041	34	2.1	35	82	7	87	54	9	15	20	1.68
127373--127423	19	2.6	19	87	3	66	35	15	17	31	1.92
132149--132189	6	6.8	6	100	0	82	51	0	48	0	1.00
133966--134011	24	1.9	24	95	0	83	45	28	6	19	1.75
134016--134098	28	3.0	28	96	0	148	49	19	10	20	1.78
135991--136036	21	2.1	22	84	4	58	19	30	19	30	1.97
138582--138627	24	1.9	24	95	0	83	45	28	6	19	1.75
138632--138714	28	3.0	28	96	0	148	49	19	10	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139764--139823	26	2.3	26	80	8	68	78	1	18	1	0.92
139802--139837	17	2.1	17	94	0	63	72	0	25	2	0.98
140789--140817	14	2.0	15	93	6	51	41	0	3	55	1.17
143188--143226	18	2.2	18	90	4	62	53	7	15	23	1.67
143332--143364	18	1.9	17	88	11	50	63	6	6	24	1.40
143448--144068	323	1.9	323	98	0	1215	39	12	17	30	1.87
144654--144740	43	2.0	43	95	0	156	27	17	4	50	1.65
145767--145860	47	2.0	47	97	0	179	29	5	10	54	1.57
149463--149568	43	2.5	43	79	0	113	34	13	13	38	1.83
149505--149615	42	2.6	42	81	1	123	34	11	13	40	1.81

Tables:   1   2   3