genome.fa.s2677.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2677
Parameters: 2 7 7 80 10 50 1000
Length:  391444

Tables:   1   2   3   

This is table  3  of  3  ( 306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292082--292143	28	2.3	27	82	2	70	32	12	29	25	1.93
298563--298711	52	2.9	51	86	4	217	30	16	18	34	1.93
298700--298724	13	1.9	13	100	0	50	36	16	16	32	1.90
298765--298831	33	2.0	33	88	0	98	40	14	11	32	1.83
298787--298811	13	1.9	13	100	0	50	32	16	16	36	1.90
303445--303491	17	2.8	17	78	12	51	2	25	0	72	0.96
309912--309998	20	4.3	20	86	7	97	39	14	16	29	1.88
310026--310079	21	2.6	21	87	0	81	37	12	14	35	1.85
314881--314957	20	3.8	20	81	6	91	40	10	16	32	1.83
314985--315036	21	2.6	21	87	6	72	30	15	13	40	1.86
314982--315036	19	2.8	19	86	5	74	29	14	12	43	1.82
316609--316663	12	4.5	12	76	2	56	34	0	1	63	1.05
316610--316662	16	3.2	16	78	2	52	33	0	1	64	1.05
320388--320563	96	1.8	98	85	4	250	30	21	10	37	1.88
323026--323316	146	2.0	146	99	0	573	42	14	23	19	1.88
326765--326790	13	2.0	13	100	0	52	23	15	23	38	1.92
327168--327225	29	2.0	29	86	0	80	24	29	13	32	1.94
327283--327853	29	19.9	28	84	5	579	27	31	12	29	1.92
327949--328098	32	4.8	32	69	10	105	31	29	18	20	1.97
328149--328536	52	7.5	52	71	6	225	26	21	14	37	1.92
328342--328524	101	1.8	101	83	2	242	25	22	15	36	1.94
328954--329005	20	2.5	21	84	6	70	36	13	21	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328954--329047	21	4.6	19	87	10	75	37	13	18	30	1.90
328992--329047	21	2.7	21	100	0	112	39	14	14	32	1.86
329583--329607	13	1.9	13	100	0	50	32	16	16	36	1.90
329688--329755	33	2.1	32	88	2	100	36	19	11	32	1.88
332742--332932	98	2.0	97	86	3	267	29	24	11	34	1.90
336944--336985	17	2.5	17	88	0	57	38	0	23	38	1.55
342193--342217	13	1.9	13	100	0	50	36	16	16	32	1.90
342173--342238	32	2.0	33	88	2	98	33	12	15	39	1.84
342279--342303	13	1.9	13	100	0	50	32	16	16	36	1.90
342312--342432	52	2.3	52	97	0	224	34	18	18	28	1.94
348608--348747	52	2.7	51	80	5	156	42	10	17	30	1.82
350200--350237	12	2.9	13	80	11	51	13	10	0	76	1.02
352214--352251	13	2.9	13	92	0	58	31	10	18	39	1.85
352714--352812	36	2.8	35	81	6	112	31	11	26	31	1.91
356239--356267	14	2.1	14	100	0	58	51	20	13	13	1.75
356703--356728	13	2.0	13	100	0	52	30	15	15	38	1.88
357353--357470	38	3.1	38	90	4	157	35	24	5	33	1.80
357475--357518	21	2.1	21	83	8	54	25	31	4	38	1.76
359318--359342	13	1.9	13	100	0	50	40	16	16	28	1.89
361421--361451	15	2.1	15	93	0	53	12	22	16	48	1.80
363255--363299	21	2.1	21	84	8	56	22	20	4	53	1.63
367066--367095	13	2.4	13	94	5	53	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367066--367095	6	4.8	6	92	8	51	53	0	0	46	1.00
368145--368191	9	5.0	9	76	19	51	53	2	2	42	1.25
368139--368185	21	2.3	22	78	14	55	48	2	2	46	1.25
368399--368792	171	2.3	170	81	7	426	46	5	5	42	1.50
368742--368780	11	3.6	11	83	16	55	41	5	0	53	1.23
368738--368781	11	4.3	10	83	8	54	36	4	0	59	1.18
368742--368787	22	2.1	22	88	8	67	45	4	0	50	1.21
370645--370703	31	1.9	31	100	0	118	27	16	15	40	1.89
370658--370756	52	1.9	51	91	2	162	29	17	15	38	1.90
371942--371976	13	2.7	13	100	0	70	0	20	25	54	1.45
375234--375308	19	3.8	20	82	7	80	30	16	17	36	1.91
375352--375382	13	2.4	13	94	0	53	35	16	12	35	1.87
375336--375402	33	2.0	32	88	11	100	35	13	17	32	1.89
381445--381475	13	2.4	13	94	0	53	35	16	12	35	1.87
387807--387831	3	8.3	3	100	0	50	32	36	0	32	1.58
389354--389408	20	2.8	20	97	2	103	40	12	10	36	1.79
389467--389497	13	2.4	13	94	0	53	35	12	16	35	1.87
389444--389513	33	2.1	34	86	7	99	34	20	11	34	1.88
389542--389614	20	3.7	19	83	8	76	38	19	13	28	1.90
390610--390690	13	7.2	12	69	25	70	33	18	17	30	1.94
390610--390689	33	2.4	33	100	0	160	33	18	17	30	1.94
390624--390688	20	3.6	20	73	26	81	32	18	18	30	1.95

Tables:   1   2   3

The End!