genome.fa.s2698.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2698
Parameters: 2 7 7 80 10 50 1000
Length:  473008

Tables:   1   2   3   4   

This is table  3  of  4  ( 361 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341061--341104	21	2.0	21	86	4	61	36	2	29	31	1.70
341638--341677	20	2.1	19	90	9	64	25	15	22	37	1.93
341756--341807	20	2.7	20	90	3	79	40	17	11	30	1.85
352904--353246	155	2.2	154	80	3	357	40	18	14	25	1.89
354257--354306	20	2.5	20	86	3	73	42	10	16	32	1.81
356019--356076	21	2.8	21	76	12	66	32	8	13	44	1.75
356123--356176	21	2.6	22	82	8	69	31	16	12	38	1.87
356143--356209	33	2.0	33	91	0	107	35	17	11	34	1.87
358403--358428	13	2.0	13	100	0	52	30	15	15	38	1.88
358384--358446	32	2.0	32	87	6	92	28	15	15	39	1.89
359126--359169	21	2.1	21	83	8	54	25	31	4	38	1.76
363066--363096	15	2.1	15	93	0	53	12	22	16	48	1.80
364902--364946	21	2.1	21	84	8	56	22	20	4	53	1.63
365262--365302	21	2.0	21	85	9	57	39	12	9	39	1.76
365342--365412	20	3.6	19	77	7	70	40	16	12	29	1.86
365395--365480	34	2.5	34	96	0	154	33	17	20	27	1.95
365609--365634	13	2.0	13	100	0	52	30	15	23	30	1.95
368540--368565	13	2.0	13	100	0	52	30	15	15	38	1.88
376311--376362	21	2.5	21	81	9	63	30	15	13	40	1.86
376329--376395	33	2.0	33	88	0	98	35	14	14	34	1.88
376504--376547	22	2.0	21	87	12	63	29	9	11	50	1.69
376506--376554	21	2.3	22	82	10	57	34	12	8	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387756--387804	21	2.3	21	80	13	57	36	16	6	40	1.73
387871--387895	13	1.9	13	100	0	50	36	8	16	40	1.77
387884--387935	20	2.6	20	87	6	70	28	17	17	36	1.92
389743--389879	70	2.0	70	85	2	186	30	19	10	39	1.85
389797--390053	96	2.7	97	80	6	290	29	19	11	39	1.87
389797--390107	96	3.2	95	74	10	281	27	21	12	38	1.89
395321--397035	62	27.7	62	82	5	1867	24	25	20	29	1.99
395321--398872	124	28.8	124	81	4	3833	23	25	20	30	1.98
395321--398872	186	19.2	185	81	5	3805	23	25	20	30	1.98
396927--397124	109	1.8	109	87	2	299	24	26	18	30	1.98
397036--398872	62	29.7	62	82	5	1924	23	25	20	31	1.98
398861--398979	45	2.8	41	79	12	141	18	24	13	43	1.86
398862--399025	42	3.9	40	76	8	130	18	24	14	42	1.87
399204--399325	44	2.8	44	86	3	149	17	28	12	41	1.85
399399--400053	42	15.9	41	74	12	415	20	26	12	40	1.87
399457--399804	120	2.8	123	78	13	340	21	28	11	38	1.88
399398--399849	41	10.8	40	72	15	258	20	27	12	39	1.88
399399--399849	81	5.4	82	76	14	345	20	27	12	39	1.88
399864--400011	77	1.9	76	80	9	167	21	24	11	42	1.86
399983--400070	40	2.2	38	77	13	88	19	30	10	39	1.85
403013--403526	78	6.5	79	79	6	456	28	26	12	33	1.92
403013--403458	157	2.8	155	82	4	529	28	25	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403013--403489	79	6.1	79	79	7	452	28	25	12	33	1.92
403013--403518	157	3.2	156	80	4	502	28	25	12	33	1.92
409641--410286	62	10.6	62	81	5	679	23	25	20	30	1.99
410251--410330	38	2.1	38	83	4	99	21	26	12	40	1.89
410537--411434	62	14.5	62	80	4	954	24	26	18	30	1.98
410537--413064	124	20.1	124	74	9	1503	24	25	17	31	1.97
410537--413065	186	13.4	186	72	10	1508	24	25	17	31	1.97
410537--413064	247	10.1	245	71	11	1288	24	25	17	31	1.97
411687--413064	62	22.3	62	78	6	1190	25	25	18	30	1.98
413035--413101	35	1.9	35	93	0	116	28	20	23	26	1.99
412970--413161	97	2.0	97	89	2	296	25	26	20	27	1.99
413070--413979	62	14.7	62	80	3	893	24	24	19	30	1.98
412849--413279	221	2.0	220	82	3	526	25	25	18	30	1.98
413070--413979	185	4.9	185	80	2	939	24	24	19	30	1.98
413070--416642	247	14.2	244	68	12	1155	23	25	18	32	1.97
413070--453056	309	125.2	310	66	14	4845	23	25	18	32	1.97
414236--415558	62	21.4	62	81	2	1327	24	25	18	31	1.98
415812--432648	62	269.5	62	72	9	8608	23	25	18	32	1.97
416607--416794	85	2.3	82	78	11	197	18	24	17	39	1.92
416812--416899	40	2.2	40	81	8	97	19	27	10	43	1.83
418994--419563	307	1.9	307	89	1	892	22	27	15	34	1.95
419591--419636	15	3.1	15	74	22	51	2	28	2	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420550--420629	38	2.1	38	83	4	99	20	23	15	41	1.89
420573--420692	45	2.8	43	80	8	138	16	22	14	46	1.83
420839--421446	246	2.5	247	84	1	792	24	26	19	29	1.98
419936--422038	899	2.3	899	86	3	2861	22	26	17	33	1.96
421730--422038	123	2.5	124	87	0	431	23	27	18	30	1.98
421184--422630	591	2.4	590	89	2	2219	22	26	16	34	1.95
422327--427668	247	21.6	242	77	6	3911	24	25	18	31	1.98
422327--431576	247	36.9	243	71	10	3886	24	25	18	31	1.97
429365--429445	38	2.1	38	81	4	92	18	22	16	43	1.88
430072--430180	43	2.6	40	79	15	114	22	25	11	41	1.86
430085--430180	40	2.3	43	81	12	112	23	26	11	38	1.89
422327--424458	185	11.5	186	78	6	1571	24	25	18	31	1.98
431699--431778	42	1.9	41	87	2	115	17	22	16	43	1.87
432868--433759	62	14.5	61	78	4	833	24	24	19	31	1.98
432950--433759	185	4.4	182	75	7	588	24	24	19	32	1.98
432868--435940	247	12.3	246	74	9	1224	24	24	18	32	1.97
434011--436514	62	40.5	62	78	3	2289	24	25	19	30	1.98
434011--438090	186	21.8	185	73	9	2491	23	25	18	31	1.98
436768--438092	62	21.5	62	79	4	1264	23	25	19	30	1.98
438262--438349	40	2.2	40	82	12	99	19	29	10	40	1.84
438337--443625	62	84.6	62	73	7	2661	23	26	18	31	1.98
438337--442542	124	33.8	123	76	6	2928	23	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438337--451364	432	29.7	429	71	11	3718	23	25	18	31	1.98
443870--445441	62	25.5	62	82	3	1553	24	25	19	30	1.98
443886--447139	185	17.4	185	74	8	1914	24	25	19	31	1.98
443870--448919	247	20.1	246	72	11	2592	24	25	18	31	1.97
445436--445532	45	2.2	43	83	5	115	17	25	11	45	1.82
445597--445707	42	2.7	41	78	6	109	24	25	11	38	1.89
445686--447997	62	37.4	62	73	6	1402	23	25	18	31	1.97
448015--453095	62	81.6	62	71	10	2277	23	25	18	31	1.98
449164--463580	556	25.5	548	70	14	2846	23	25	18	31	1.97
451329--451491	39	4.0	40	73	16	111	17	24	14	43	1.86
451725--451783	31	1.9	31	92	0	100	25	25	22	27	2.00
451658--451844	92	2.0	92	85	3	250	24	26	20	28	1.99
451617--451900	154	1.8	154	84	1	390	25	27	19	27	1.99
453340--453746	62	6.6	62	82	2	426	24	27	17	30	1.97
453365--453745	123	3.1	123	83	5	432	24	26	17	31	1.97
454001--455016	62	16.4	62	80	3	938	23	25	19	30	1.98
455261--455667	62	6.6	62	82	2	419	23	26	19	30	1.98
455286--455666	123	3.1	123	81	5	405	23	26	19	31	1.98
455663--455753	45	2.0	44	85	2	119	16	21	13	48	1.80
455935--463581	124	61.1	124	75	8	4759	23	25	18	31	1.98
455922--458539	62	42.4	62	81	2	2703	24	26	19	29	1.98
458795--459810	62	16.4	62	79	3	904	23	25	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460055--460461	62	6.6	62	81	3	410	23	26	19	30	1.98
460080--460460	123	3.1	122	80	6	387	23	25	19	31	1.98
460456--460547	45	2.1	44	85	2	121	16	21	13	48	1.79
460716--463581	370	7.7	365	79	5	2695	24	25	19	30	1.98
460716--463581	62	46.4	61	80	4	2703	24	25	19	30	1.98
463827--464049	62	3.6	62	82	4	243	25	26	17	30	1.97
464772--464816	19	2.3	20	84	3	56	24	13	17	44	1.85
465475--465518	21	2.1	21	83	8	54	25	31	4	38	1.76
467323--467357	13	2.7	13	90	0	61	34	11	17	37	1.85
467323--467427	45	2.3	45	85	8	133	39	14	15	31	1.87

Tables:   1   2   3   4