genome.fa.s2713.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2713
Parameters: 2 7 7 80 10 50 1000
Length:  368274

Tables:   1   2   3   

This is table  3  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303701--303782	40	2.0	40	95	0	146	0	1	12	86	0.63
303713--303782	1	70.0	1	76	0	68	0	0	11	88	0.51
310685--310805	52	2.3	52	97	0	224	28	18	18	34	1.94
310685--310825	52	2.7	51	90	4	212	30	17	18	33	1.94
310814--310838	13	1.9	13	100	0	50	36	16	16	32	1.90
310903--310927	13	1.9	13	100	0	50	32	16	16	36	1.90
310882--310947	32	2.0	33	88	2	98	39	13	12	34	1.82
315936--316128	79	2.4	80	82	5	232	34	15	22	26	1.94
316070--316181	51	2.2	52	83	1	136	34	14	23	27	1.93
316115--316656	79	6.8	79	78	5	475	34	13	24	27	1.93
315957--316339	210	1.8	210	83	4	504	33	15	24	25	1.95
316197--316661	158	2.9	157	81	4	524	34	13	23	27	1.93
316120--316656	237	2.3	238	79	4	548	34	13	24	27	1.93
319067--319121	20	2.8	20	97	0	101	47	10	12	29	1.76
319373--319419	21	2.2	21	84	0	58	40	0	2	57	1.11
320625--320693	33	2.1	33	83	5	86	44	7	2	44	1.46
320711--320751	14	3.2	14	74	25	54	51	0	0	48	1.00
320722--320784	30	2.1	30	84	0	81	42	0	1	55	1.09
322021--322079	31	1.9	31	82	6	75	55	1	5	37	1.32
322066--322132	30	2.2	31	81	2	82	40	1	0	58	1.07
322986--323088	16	6.4	16	76	12	61	51	17	7	23	1.71
323050--323080	16	1.9	16	100	0	62	61	12	6	19	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323536--323579	2	23.0	2	90	9	74	52	0	0	47	1.00
325815--325992	87	2.0	88	86	3	252	37	20	5	36	1.75
329396--329547	77	2.0	78	93	1	261	26	9	18	44	1.81
334052--334327	79	3.5	78	78	7	249	35	12	24	27	1.91
334372--334584	79	2.7	79	84	5	279	37	12	23	26	1.91
334374--334621	79	3.1	77	81	7	259	36	12	23	27	1.91
336869--337006	52	2.7	52	81	2	143	40	10	16	31	1.83
340652--340720	27	2.6	27	92	0	120	33	18	23	24	1.97
349143--349332	79	2.4	79	83	4	231	32	21	8	37	1.85
349206--349480	130	2.1	130	85	3	374	29	24	9	36	1.87
349285--349412	51	2.6	50	82	8	154	29	22	7	39	1.82
349337--349489	79	1.9	81	85	2	211	28	25	9	36	1.87
349338--349540	81	2.5	80	78	6	187	32	25	6	36	1.81
354796--354833	20	1.9	20	88	0	58	31	18	13	36	1.89
360452--361064	28	21.6	28	84	3	676	23	17	28	31	1.97
361020--361423	27	14.8	27	82	4	461	30	15	30	23	1.95
361020--361423	55	7.4	54	84	3	497	30	15	30	23	1.95
363693--363730	13	2.9	13	96	0	67	34	18	15	31	1.92
365657--365681	13	1.9	13	100	0	50	32	16	16	36	1.90
367208--367371	83	2.0	84	82	10	203	24	20	3	51	1.63

Tables:   1   2   3

The End!