genome.fa.s272.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold272
Parameters: 2 7 7 80 10 50 1000
Length:  421410

Tables:   1   2   3   

This is table  3  of  3  ( 343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272897--273776	86	10.2	86	81	8	865	28	29	18	23	1.98
274225--274265	21	2.0	21	85	0	55	60	14	7	17	1.55
274888--275068	79	2.3	79	81	7	199	33	19	10	36	1.86
275889--276049	70	2.3	70	78	4	173	40	11	19	27	1.86
276155--276223	33	2.1	33	84	13	88	44	13	14	27	1.82
276337--276426	34	2.7	33	81	8	101	38	10	11	40	1.74
277994--278030	18	2.1	18	90	5	58	0	5	10	83	0.79
281265--281550	154	1.9	153	80	7	339	36	20	18	24	1.95
282993--283028	18	1.9	18	88	5	54	0	38	0	61	0.96
283161--283201	14	2.9	15	86	13	61	0	19	0	80	0.71
285980--286026	16	2.9	16	80	0	58	51	27	12	8	1.69
286496--286525	16	1.9	15	93	6	51	53	3	16	26	1.59
286843--286951	18	6.0	17	72	21	71	56	1	2	38	1.24
287081--287137	16	3.6	16	82	0	69	47	24	15	12	1.80
287093--287167	16	4.7	16	77	6	71	50	24	12	13	1.75
287073--287186	32	3.6	32	77	2	122	44	28	13	13	1.81
287071--287175	16	6.6	16	71	9	63	47	28	11	12	1.76
287173--287224	16	3.2	16	75	0	50	36	32	19	11	1.87
288852--288876	6	4.2	6	100	0	50	68	0	0	32	0.90
290224--290262	16	2.4	17	86	4	53	48	15	7	28	1.72
293531--293593	31	2.0	31	90	6	101	28	17	9	44	1.80
293562--293694	51	2.6	51	84	2	180	27	16	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294569--294619	19	2.7	19	84	9	68	39	15	15	29	1.89
296818--296862	21	2.1	21	84	8	56	53	4	20	22	1.63
300766--300791	13	2.0	13	100	0	52	30	15	15	38	1.88
303321--303346	13	2.0	13	100	0	52	38	15	15	30	1.88
305953--306460	79	6.4	78	77	6	450	27	23	14	34	1.94
305934--306457	157	3.3	155	80	5	534	27	23	14	34	1.93
309535--309559	13	1.9	13	100	0	50	32	16	20	32	1.94
309515--309578	33	2.0	32	90	3	101	28	12	21	37	1.90
309611--309665	20	2.7	21	85	2	76	27	16	14	41	1.87
309686--309724	20	2.0	19	85	5	51	23	10	28	38	1.87
310230--310274	22	2.0	22	87	8	65	35	26	0	37	1.57
312145--312182	13	2.9	13	92	0	58	34	15	15	34	1.90
318316--318340	13	1.9	13	100	0	50	32	16	20	32	1.94
318296--318359	33	2.0	32	90	3	101	28	12	21	37	1.90
318475--318499	13	1.9	13	100	0	50	32	16	20	32	1.94
318455--318518	33	2.0	33	90	3	103	29	12	20	37	1.89
325184--325237	20	2.7	20	85	0	63	35	11	14	38	1.82
325336--326360	34	31.7	32	78	11	778	18	31	14	36	1.90
325336--326360	32	31.7	32	79	11	905	18	31	14	36	1.90
326140--326227	33	3.0	27	75	20	79	21	28	13	36	1.92
325850--326367	60	8.2	60	76	13	397	20	31	12	35	1.90
326354--326495	43	3.2	43	79	6	131	30	26	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326357--327132	49	16.8	48	73	13	576	26	25	17	30	1.98
326598--326754	39	3.8	38	72	17	134	24	28	19	27	1.99
326360--327084	175	4.0	174	82	7	749	26	25	18	29	1.98
326367--327084	88	7.9	88	82	8	714	26	25	18	29	1.98
326367--327084	263	2.6	267	84	6	854	26	25	18	29	1.98
326861--327139	149	1.9	146	87	2	405	24	25	17	33	1.96
326357--327184	175	4.5	185	81	7	657	25	25	17	30	1.98
333883--333931	26	1.9	25	87	4	71	48	10	14	26	1.75
337896--337948	1	53.0	1	80	0	61	90	3	5	0	0.54
337896--337951	9	6.2	9	85	8	69	89	3	7	0	0.59
337896--337948	21	2.7	20	88	5	72	90	3	5	0	0.54
338914--339245	61	5.4	60	80	7	360	25	28	18	27	1.98
339060--339188	67	1.9	68	84	4	172	24	27	17	29	1.98
338914--339250	128	2.7	125	83	5	432	25	28	18	27	1.98
339796--339913	51	2.3	51	85	1	166	28	16	14	39	1.88
342231--342812	79	7.3	79	79	8	538	27	23	12	36	1.91
342250--342780	158	3.4	159	82	3	633	27	23	13	34	1.93
344979--345055	33	2.3	33	86	0	109	37	16	14	31	1.89
346670--346704	15	2.3	15	95	0	61	42	0	28	28	1.56
353784--353837	19	2.8	20	85	2	74	27	16	18	37	1.93
355742--355821	40	2.0	40	92	0	133	48	10	5	36	1.58
356945--356969	13	1.9	13	100	0	50	56	24	0	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358059--358095	18	2.0	19	85	15	51	64	2	0	32	1.07
358060--358108	25	1.9	26	84	12	66	63	4	0	32	1.13
358168--358287	60	2.0	60	85	6	163	46	9	10	34	1.69
359765--359906	65	2.2	66	76	3	153	40	14	21	22	1.90
360059--360274	40	5.4	40	80	6	224	44	12	23	20	1.84
360025--360305	120	2.3	120	85	2	368	44	13	24	18	1.85
360095--360312	80	2.7	80	85	5	264	44	13	22	19	1.85
360081--360312	40	5.8	40	77	8	197	44	12	23	19	1.85
360795--361081	75	3.8	75	77	5	254	44	13	14	27	1.83
362532--362570	20	1.9	21	89	5	62	23	10	10	56	1.63
365836--365897	33	1.9	32	86	3	88	41	14	16	27	1.87
376711--376795	10	8.6	10	79	6	75	83	9	4	2	0.87
376711--376781	18	3.7	18	78	10	70	84	8	4	2	0.84
376711--376805	12	8.2	11	72	19	61	82	9	5	3	0.94
378018--378241	28	8.1	28	86	2	292	26	31	19	22	1.98
378018--378241	83	2.7	83	87	3	301	26	31	19	22	1.98
378624--378649	13	2.0	13	100	0	52	38	15	15	30	1.88
380856--380905	21	2.3	21	80	10	57	56	4	18	22	1.58
384646--384691	21	2.2	20	81	11	58	32	19	4	43	1.71
387047--387084	19	2.0	19	89	0	58	36	21	13	28	1.91
387072--387097	13	2.0	13	100	0	52	38	15	15	30	1.88
387841--388293	28	16.0	28	87	0	546	27	31	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389153--389207	20	2.8	20	77	0	65	30	12	14	41	1.83
393529--393583	19	2.8	19	83	2	65	30	16	14	38	1.89
393630--393661	13	2.5	13	94	0	55	31	12	15	40	1.85
396792--396862	29	2.4	30	90	6	110	26	19	15	38	1.92
399301--399397	51	1.9	51	91	0	158	27	23	12	36	1.91
399227--399543	130	2.4	129	85	2	420	29	23	11	35	1.89
399419--399536	51	2.3	51	83	2	157	30	24	11	33	1.90
399523--399564	21	2.0	21	90	0	66	23	33	7	35	1.82
406049--406073	13	1.9	13	100	0	50	36	16	16	32	1.90
406029--406093	33	2.0	33	87	6	96	36	15	15	32	1.89
406566--406656	36	2.7	33	79	15	114	30	14	25	29	1.95
408744--408786	19	2.3	19	95	0	77	34	11	16	37	1.85
410525--410549	13	1.9	13	100	0	50	32	16	16	36	1.90
410558--410738	52	3.5	52	97	0	335	34	18	17	28	1.94
414860--414886	10	2.7	10	100	0	54	0	0	22	77	0.76

Tables:   1   2   3

The End!