genome.fa.s2750.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2750
Parameters: 2 7 7 80 10 50 1000
Length:  130699

Tables:   1   2   

This is table  2  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123451--123578	19	6.4	20	68	16	61	3	73	3	19	1.13
123524--123602	27	3.0	26	80	12	81	7	78	0	13	0.95
123638--124530	8	107.0	8	68	20	230	5	76	1	15	1.05
123634--123712	25	3.1	26	77	15	69	2	78	1	17	0.93
123634--124239	26	24.1	24	69	19	171	4	77	1	15	1.02
123769--124101	5	65.4	5	70	23	139	2	78	1	18	0.94
123787--124527	81	9.1	80	68	20	271	5	78	1	14	1.00
123840--124240	1	401.0	1	64	0	109	4	80	1	13	0.92
124252--124524	14	18.0	14	66	21	60	6	76	1	15	1.05
124253--124300	11	4.3	11	80	12	53	2	85	0	12	0.69
124266--124470	60	3.5	60	76	17	150	7	74	1	16	1.11
124384--124527	1	144.0	1	66	0	54	4	81	0	13	0.83
124381--124509	19	6.4	20	76	14	122	3	79	0	16	0.87
124384--124530	25	5.9	24	72	12	109	4	81	0	13	0.84
124333--124471	60	2.3	61	85	8	178	7	77	0	15	0.97
123837--124571	41	17.8	39	67	20	133	6	78	1	14	1.02
124404--124527	21	5.8	21	72	19	69	5	82	0	12	0.83
124384--124573	102	1.9	102	82	8	246	6	79	0	13	0.95
124590--124677	40	2.2	39	77	2	95	7	73	1	17	1.12
124614--124686	29	2.4	30	75	8	78	5	75	1	17	1.07
124611--124716	49	2.2	49	80	11	112	7	72	0	18	1.13
124679--124785	33	3.3	31	72	14	83	9	68	0	21	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124948--124991	18	2.4	18	81	11	54	4	79	0	15	0.89
124996--125038	1	43.0	1	80	0	50	9	90	0	0	0.45
125073--125442	11	32.5	11	64	16	69	5	75	1	17	1.06
125073--125442	14	27.5	13	64	22	76	5	75	1	17	1.06
125073--125170	40	2.4	41	81	11	112	4	75	1	19	1.02
125100--125423	60	5.6	57	70	20	144	5	75	1	17	1.09
125075--125443	39	9.0	40	69	19	151	5	75	1	17	1.07
125144--125339	100	1.9	102	80	8	231	3	76	2	17	1.05
125374--125443	35	2.0	34	83	10	88	7	80	0	12	0.91
125308--125443	15	8.4	15	70	23	64	5	77	0	16	1.01
125532--125560	14	2.1	14	93	6	51	6	82	6	3	0.93
125570--125661	18	4.7	19	71	19	73	3	78	1	17	0.95
125528--125643	21	5.4	20	76	16	101	4	78	2	14	1.01
125528--125643	11	10.9	10	73	15	90	4	78	2	14	1.01
125790--125841	27	2.0	26	84	3	68	7	71	0	21	1.11
126031--126112	37	2.2	37	83	16	109	6	75	1	17	1.06
126034--126199	52	3.3	49	73	21	137	5	75	3	15	1.11
126120--126149	14	2.1	15	93	6	53	0	90	6	3	0.56
126123--126248	46	2.7	46	77	13	109	6	78	3	11	1.05
126035--126243	19	10.7	19	64	18	65	5	76	3	14	1.10
126212--126245	14	2.4	14	86	13	52	2	88	0	8	0.62
126276--126770	27	19.8	25	67	22	106	4	77	2	15	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126330--126691	121	3.0	116	78	15	294	3	78	3	14	1.02
126474--126855	52	7.5	49	70	18	203	3	80	3	12	0.96
126440--126704	140	1.9	141	81	11	330	3	80	2	13	0.94
126530--126845	41	7.9	38	72	19	139	4	80	3	11	0.98
126481--126830	121	2.8	119	77	16	291	4	80	2	12	0.96
126338--126877	47	10.9	48	69	18	188	4	78	3	13	1.02
126483--126855	1	373.0	1	68	0	116	4	81	3	11	0.95
126645--126935	130	2.2	133	80	13	332	4	79	2	13	0.99
126294--127062	12	57.0	13	67	18	198	4	77	2	15	1.05
126457--127013	21	26.8	21	68	19	98	4	78	2	14	1.01
127086--127120	10	3.4	10	88	4	52	8	82	0	8	0.83
127175--127208	14	2.3	15	90	5	52	2	67	5	23	1.26
127358--127551	31	6.1	31	68	20	100	4	77	1	15	1.00
127358--127542	15	11.8	15	68	21	80	4	78	1	15	0.99
127362--127538	16	11.6	14	69	18	95	4	78	1	15	0.99
127366--127539	73	2.5	70	78	13	178	4	78	1	15	1.00
127362--127536	18	10.2	17	70	14	85	4	78	1	15	1.00
127510--127552	20	2.1	20	86	4	59	4	83	0	11	0.78
127732--127795	18	3.6	18	73	14	60	70	7	1	20	1.21
127842--127966	17	7.4	17	68	19	66	77	8	0	13	0.98
127842--127961	13	8.5	14	68	21	56	78	8	0	13	0.96
127856--128000	9	14.3	10	70	21	65	75	10	1	12	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127930--127961	14	2.3	14	100	0	64	93	0	0	6	0.34
127936--127966	16	1.9	16	93	0	53	90	3	0	6	0.55
128003--128049	22	2.2	20	85	14	58	68	12	0	19	1.21
128003--128054	23	2.3	22	81	15	61	67	13	0	19	1.23
128255--128288	16	2.1	16	88	5	50	73	11	0	14	1.10
128269--128332	33	1.9	33	87	6	94	78	7	0	14	0.96
128285--128354	27	2.5	29	73	17	76	77	5	0	17	0.96
128275--128338	21	3.1	21	77	4	69	81	6	0	12	0.87
128261--128347	33	2.5	33	75	17	88	78	6	0	14	0.95
128267--128354	38	2.3	37	80	18	108	77	6	0	15	0.97
128400--128430	16	1.9	16	93	0	53	93	3	3	0	0.41
128756--128787	16	2.1	16	94	5	57	75	0	0	25	0.81
129273--129315	14	3.0	14	80	6	59	76	16	0	6	0.99
129271--129334	29	2.2	28	83	13	76	73	18	0	7	1.07
129905--129966	23	2.7	23	82	0	70	72	16	1	9	1.18
129962--130090	17	7.8	17	70	15	67	71	9	0	18	1.17
129959--130008	26	1.9	26	87	0	73	74	6	2	18	1.12
129956--130013	30	1.9	31	85	3	82	75	5	1	17	1.06
129964--130095	32	4.0	34	73	18	109	70	9	0	19	1.19
130043--130095	16	2.9	19	73	21	60	71	13	0	15	1.14
130109--130145	14	2.5	15	91	8	58	81	8	0	10	0.89
130575--130606	16	2.1	16	94	5	57	90	9	0	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130564--130609	20	2.2	20	92	3	74	86	13	0	0	0.56

Tables:   1   2

The End!