genome.fa.s2752.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2752
Parameters: 2 7 7 80 10 50 1000
Length:  500988

Tables:   1   2   3   

This is table  2  of  3  ( 259 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317865--317899	18	1.9	18	88	11	54	31	2	0	65	1.07
319320--319361	2	21.5	2	95	4	77	50	0	0	50	1.00
319727--319765	2	19.5	2	100	0	78	48	0	0	51	1.00
326463--326532	32	2.2	32	94	0	122	34	11	17	37	1.85
326718--326759	11	4.0	10	80	19	50	78	0	0	21	0.75
326722--326759	14	2.7	15	84	15	55	76	0	0	23	0.79
326709--326759	21	2.4	21	80	6	59	80	0	1	17	0.81
326880--326942	19	3.7	18	74	24	64	31	11	17	39	1.85
326898--326924	13	2.1	13	100	0	54	29	14	14	40	1.86
326878--326950	32	2.3	32	90	0	119	32	10	17	38	1.85
326970--327029	21	2.9	21	100	0	120	41	10	18	30	1.83
327016--327042	13	2.1	13	100	0	54	29	14	14	40	1.86
326995--327064	34	2.1	34	100	0	140	37	11	18	32	1.87
327100--327155	20	2.8	20	94	0	94	33	10	10	44	1.74
328534--328572	20	1.9	21	85	15	55	15	5	5	74	1.17
328573--328607	2	17.5	2	93	0	61	45	0	2	51	1.16
333009--333132	52	2.4	53	86	2	171	31	26	10	31	1.90
333141--333358	79	2.8	77	79	8	215	26	27	13	33	1.93
334355--334381	13	2.1	13	100	0	54	29	14	18	37	1.91
334366--334419	20	2.7	20	100	0	108	25	14	14	44	1.84
342561--342810	31	8.1	31	78	8	242	23	29	15	32	1.95
342568--342808	126	1.9	124	81	8	290	24	29	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342838--343228	34	12.2	34	76	12	278	20	30	12	36	1.90
342880--343100	61	3.5	61	90	5	318	20	32	12	34	1.90
342880--343125	27	8.1	27	70	19	123	21	32	12	34	1.90
342820--343228	61	6.4	65	81	10	298	20	30	12	36	1.90
342847--343228	155	2.4	156	84	6	468	20	30	12	36	1.90
342940--343187	94	2.6	95	81	5	290	20	31	12	35	1.90
343201--343301	30	3.4	30	81	9	91	34	30	16	17	1.93
343313--344044	49	15.9	48	73	13	521	24	25	19	30	1.98
343319--343616	87	3.4	87	91	0	479	26	25	19	27	1.99
343455--343743	126	2.3	126	88	0	443	26	26	20	25	1.99
343581--343996	101	4.4	89	84	8	320	23	25	20	30	1.98
343368--343796	213	2.0	215	90	1	673	25	25	20	27	1.99
343714--344042	101	3.3	100	90	2	511	21	24	19	33	1.97
343714--344102	199	1.9	202	84	3	525	21	25	19	33	1.96
343721--344150	49	8.6	50	78	7	329	21	25	19	33	1.96
344920--344977	13	4.0	13	74	23	53	34	15	17	32	1.91
344912--344976	32	2.0	32	96	0	121	33	13	18	33	1.90
348379--348614	97	2.4	97	83	3	278	28	31	12	27	1.93
353164--353472	50	6.2	50	90	3	478	30	19	21	29	1.97
357864--357972	50	2.2	50	93	0	182	29	18	22	30	1.97
360408--360449	16	2.6	16	88	3	57	19	2	2	76	1.01
361578--361632	21	2.6	21	81	13	69	18	29	0	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364008--364092	43	2.0	43	95	0	152	50	20	15	14	1.77
371981--372017	2	18.5	2	100	0	74	51	0	48	0	1.00
372355--372394	12	3.2	13	86	13	57	37	0	0	62	0.95
372560--372628	19	3.6	19	80	3	84	34	4	4	56	1.39
376493--376564	20	3.5	20	73	14	56	41	12	11	34	1.78
376694--376749	21	2.7	21	94	0	103	35	12	14	37	1.84
377414--377718	52	6.0	51	74	9	246	37	15	23	24	1.93
377423--377718	101	2.9	102	80	5	321	35	15	23	24	1.94
377787--377841	27	2.0	27	82	0	65	30	10	32	25	1.90
377809--378122	34	9.4	33	75	13	243	36	8	32	22	1.84
377884--377938	27	2.0	27	89	0	83	30	10	34	23	1.89
377797--378006	95	2.2	96	87	2	298	35	8	32	22	1.85
377912--378122	68	3.1	68	93	0	341	36	8	32	22	1.84
378127--378221	26	3.6	27	82	4	131	30	10	32	26	1.90
378322--378392	27	2.7	26	80	4	88	28	12	32	26	1.93
378255--378533	155	1.8	153	85	1	396	34	12	31	22	1.91
378480--378530	26	2.0	26	92	0	84	25	13	35	25	1.93
378534--378593	27	2.2	27	75	0	66	41	11	26	20	1.86
378473--378619	61	2.4	61	80	2	170	36	10	33	19	1.87
378190--379269	34	35.2	32	69	18	417	35	12	30	21	1.90
378388--378799	225	1.9	214	88	5	626	36	12	30	20	1.90
378700--379186	26	17.0	27	71	15	268	34	12	30	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378700--378812	53	2.1	53	91	0	145	33	13	31	21	1.92
378779--378978	70	2.9	69	80	3	219	40	10	29	20	1.86
378956--379223	26	9.9	27	79	10	271	32	13	29	24	1.94
378536--379084	249	2.2	242	83	6	710	36	11	30	21	1.89
378956--379186	53	4.4	53	85	3	304	31	13	29	25	1.94
378956--379186	105	2.2	106	87	2	322	31	13	29	25	1.94
380538--380563	13	2.0	13	100	0	52	30	15	15	38	1.88
381260--381303	21	2.1	21	83	8	54	25	31	4	38	1.76
383106--383157	13	4.0	13	100	0	104	38	15	15	30	1.88
383350--383383	8	4.2	8	100	0	68	61	23	0	14	1.33
385237--385267	15	2.1	15	93	0	53	12	22	16	48	1.80
387070--387114	21	2.1	21	84	8	56	22	20	4	53	1.63
389327--389352	13	2.0	13	100	0	52	30	15	15	38	1.88
394536--394757	122	1.8	123	89	1	347	27	18	29	24	1.98
394693--395417	387	1.9	387	85	2	1010	27	19	24	28	1.98
401367--401444	20	3.8	20	79	12	86	39	11	11	37	1.78
402610--402677	32	2.1	33	86	5	95	8	4	22	64	1.40
403748--403773	13	2.0	13	100	0	52	38	15	15	30	1.88
403730--403793	32	2.0	33	87	3	94	40	17	14	28	1.88
405954--405998	21	2.1	21	84	8	56	53	4	20	22	1.63
409861--409885	13	1.9	13	100	0	50	32	16	16	36	1.90
410006--410051	21	2.2	20	81	11	58	32	19	4	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412425--412450	13	2.0	13	100	0	52	38	15	15	30	1.88
412407--412470	32	2.0	33	87	3	94	40	17	14	28	1.88
414780--414914	51	2.6	51	84	2	164	25	14	13	46	1.81
422035--422220	51	3.6	50	80	8	212	30	26	10	32	1.90
422043--422220	52	3.5	50	81	7	187	29	27	11	31	1.91
422229--422405	80	2.2	80	82	4	214	28	25	14	31	1.95
422440--422512	28	2.6	29	83	10	82	26	31	16	26	1.96
422473--422670	79	2.5	79	81	2	211	26	26	16	30	1.96
435068--435141	1	74.0	1	75	0	67	87	6	1	4	0.70
435067--435134	6	11.7	6	84	12	79	86	8	0	4	0.69
435067--435130	24	2.7	23	88	9	94	87	7	0	4	0.66
435067--435141	29	2.6	30	87	4	100	86	8	1	4	0.74
436228--436589	55	6.4	57	86	5	400	27	27	21	24	1.99
436571--436663	42	2.2	42	83	7	109	19	25	16	38	1.92
437369--437603	79	3.0	78	76	4	220	26	27	14	31	1.95
439073--439099	13	2.1	13	100	0	54	29	14	14	40	1.86
446588--446612	13	1.9	13	100	0	50	36	16	16	32	1.90
446565--446632	33	2.1	33	88	2	102	32	14	17	35	1.91
446662--446715	20	2.7	20	77	5	56	31	16	12	38	1.87
448533--448573	20	2.0	22	85	9	59	7	29	43	19	1.78
452197--452227	9	3.4	9	95	0	53	25	35	0	38	1.56
453827--453851	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453804--453871	33	2.1	33	88	2	102	32	14	17	35	1.91
456780--456808	13	2.2	13	100	0	58	27	13	17	41	1.87
459227--459288	33	1.9	32	90	3	97	25	14	17	41	1.88
459258--459313	19	2.8	19	84	12	69	32	16	16	35	1.90
459358--459388	13	2.4	13	94	0	53	35	16	12	35	1.87
459342--459408	33	2.0	32	86	11	91	35	11	17	34	1.87
460372--460410	21	1.9	20	94	5	69	35	15	12	35	1.86
460447--460471	13	1.9	13	100	0	50	36	16	16	32	1.90
466961--467011	22	2.3	23	86	6	70	15	5	5	72	1.24
466695--467292	167	3.6	166	84	5	714	30	9	8	52	1.62

Tables:   1   2   3