genome.fa.s277.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold277
Parameters: 2 7 7 80 10 50 1000
Length:  582610

Tables:   1   2   3   4   

This is table  4  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476328--476392	32	2.0	32	82	11	80	66	0	0	33	0.92
476601--476679	11	7.5	11	70	17	60	68	0	1	30	0.98
476629--476671	16	2.6	17	92	3	70	65	0	2	32	1.06
476605--476692	39	2.3	38	80	16	94	65	0	1	32	1.00
477111--477158	24	2.0	25	92	8	82	20	14	20	43	1.87
477754--477793	10	4.1	9	84	15	53	15	2	0	82	0.77
491542--491608	33	2.0	33	88	0	98	34	11	13	40	1.81
491562--491586	13	1.9	13	100	0	50	36	16	16	32	1.90
491649--491673	13	1.9	13	100	0	50	32	16	16	36	1.90
491682--491856	51	3.4	51	96	1	314	35	18	17	28	1.94
495992--496018	10	2.7	10	100	0	54	0	0	22	77	0.76
505707--505819	1	113.0	1	78	0	91	86	7	3	1	0.74
505709--505819	37	2.9	37	81	10	134	86	8	3	1	0.75
505705--505821	47	2.5	47	85	12	143	83	9	5	1	0.85
507260--507340	30	2.7	30	90	3	128	28	23	20	27	1.99
507320--507414	27	3.3	27	78	17	93	32	34	16	15	1.91
507287--507414	57	2.2	60	84	4	163	29	32	17	20	1.96
507260--507386	30	4.3	30	81	9	127	30	28	17	23	1.97
507326--507414	30	3.0	30	74	19	96	31	34	16	16	1.92
507407--507658	49	5.0	49	82	7	281	26	25	15	33	1.95
507402--507655	107	2.5	99	84	7	296	25	25	15	33	1.95
508435--508501	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508455--508479	13	1.9	13	100	0	50	36	16	16	32	1.90
508542--508566	13	1.9	13	100	0	50	32	16	16	36	1.90
508575--508749	51	3.4	51	96	1	314	35	18	17	28	1.94
513692--513743	27	1.9	27	88	7	79	48	15	13	23	1.80
513734--513774	20	2.0	20	95	0	73	43	14	7	34	1.73
515095--515192	40	2.5	38	77	9	108	56	2	1	40	1.18
515114--515198	40	2.1	40	84	4	109	58	2	0	38	1.11
515180--515243	15	4.5	14	73	19	53	73	0	3	23	0.97
515535--515599	28	2.3	28	82	7	78	61	0	3	35	1.12
515555--515610	17	3.2	18	80	12	64	62	0	0	37	0.95
516258--516328	25	2.8	26	91	2	108	46	15	7	30	1.72
521624--521680	2	29.0	2	81	10	64	52	0	1	45	1.11
522788--522830	21	2.0	21	90	0	68	25	6	20	46	1.76
523644--523990	172	2.0	172	99	0	685	34	8	12	44	1.73
524171--524212	2	21.0	2	100	0	84	50	0	0	50	1.00
526077--526110	15	2.4	14	90	9	52	79	0	0	20	0.73
526354--526396	22	1.9	23	90	4	70	69	0	0	30	0.88
526351--526400	11	4.5	11	78	14	57	68	0	0	32	0.90
526350--526456	37	2.7	38	78	17	103	64	0	0	34	1.00
526437--526499	27	2.4	25	78	7	63	57	1	3	38	1.24
527713--527770	27	2.2	26	78	9	64	51	3	0	44	1.18
527745--527818	35	2.2	34	81	13	82	54	1	8	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529922--530022	27	3.9	27	77	5	100	50	16	7	24	1.72
534494--534566	27	2.7	27	82	2	92	47	15	8	28	1.73
539608--539867	87	3.0	87	97	1	479	41	21	13	23	1.88
542112--542196	42	2.0	42	100	0	170	23	21	11	43	1.85
542285--542317	17	1.9	17	93	0	57	3	15	3	78	0.99
544847--544951	40	2.6	39	83	7	122	56	1	0	40	1.17
545300--545348	17	3.0	16	82	11	64	69	2	0	28	1.00
545268--545348	29	2.8	28	81	7	92	66	1	1	30	1.07
554853--554929	2	39.0	2	85	7	104	50	0	1	48	1.09
563542--563592	23	2.1	25	82	7	61	50	5	1	41	1.37
564126--564155	10	3.0	10	95	0	51	0	13	0	86	0.57
564127--564161	16	2.1	17	89	5	54	0	17	0	82	0.66
565407--565881	32	14.8	32	93	1	783	17	18	33	30	1.94
565864--566659	27	29.1	27	89	4	1215	27	14	35	22	1.93
565864--566659	164	4.9	163	90	4	1228	27	14	35	22	1.93
565864--566659	191	4.2	189	92	3	1215	27	14	35	22	1.93
567674--567703	15	2.0	15	100	0	60	0	0	13	86	0.57
574434--574463	10	3.0	10	95	0	51	0	13	0	86	0.57
574435--574469	16	2.1	17	89	5	54	0	17	0	82	0.66
577259--577310	25	2.1	25	81	0	59	53	5	1	38	1.36
577844--577877	15	2.1	17	89	10	54	0	17	0	82	0.67
579338--579366	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582404--582436	16	2.1	16	94	0	57	27	30	6	36	1.81

Tables:   1   2   3   4

The End!