genome.fa.s288.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold288
Parameters: 2 7 7 80 10 50 1000
Length:  358258

Tables:   1   2   3   

This is table  3  of  3  ( 326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255184--255226	13	3.1	14	76	10	52	46	0	0	53	1.00
255735--255792	18	3.1	21	77	20	58	56	0	0	43	0.99
256266--256299	2	17.5	2	93	6	61	0	50	0	50	1.00
260318--260351	2	17.5	2	93	6	61	0	50	0	50	1.00
262798--262823	8	3.2	8	100	0	52	61	0	0	38	0.96
263610--263741	30	4.5	30	80	4	144	38	10	1	49	1.47
263610--263741	58	2.3	59	83	1	167	38	10	1	49	1.47
263681--263742	29	2.4	23	71	26	61	41	4	0	53	1.22
263688--263749	29	2.1	29	84	0	79	45	4	0	50	1.23
265024--265070	3	15.7	3	100	0	94	68	0	0	31	0.90
270441--270505	30	2.3	27	84	10	78	52	1	3	43	1.26
270485--270544	19	3.1	19	75	18	52	50	0	0	50	1.00
270784--270845	31	2.0	32	84	9	83	54	3	4	37	1.38
271142--271184	16	2.9	15	83	10	52	0	39	0	60	0.97
272183--272258	40	1.9	40	83	0	98	38	9	7	44	1.66
277468--277523	12	5.0	12	72	18	50	53	0	0	46	1.00
279188--279214	2	13.5	2	100	0	54	51	0	48	0	1.00
279214--279552	112	3.0	114	86	2	459	33	15	15	36	1.88
280826--280883	28	2.1	28	100	0	116	44	13	10	31	1.78
282346--282435	45	2.0	45	91	0	144	43	17	15	23	1.87
285390--285492	36	2.9	36	77	8	93	51	15	2	30	1.58
285389--285492	35	2.9	34	75	9	93	50	16	2	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286180--286244	20	3.4	19	78	8	78	36	3	1	58	1.23
286291--286331	20	2.0	21	85	4	57	41	4	12	41	1.64
289443--289499	29	2.0	29	92	0	96	36	12	12	38	1.80
290825--290889	32	2.0	32	100	0	130	27	6	18	47	1.72
293453--293565	58	1.9	59	83	5	149	32	12	5	49	1.63
293694--293738	11	4.3	10	83	10	63	84	0	13	2	0.72
294009--294069	24	2.6	25	75	19	67	19	0	14	65	1.27
294707--294796	30	3.3	27	71	17	78	41	1	0	57	1.06
297150--297192	19	2.3	19	84	8	52	20	4	9	65	1.40
297415--297454	20	2.0	21	90	5	64	50	0	0	50	1.00
297458--298107	338	1.9	332	87	3	946	50	4	7	38	1.50
298365--298411	24	2.0	24	83	8	60	46	0	0	53	1.00
298970--299123	79	2.0	77	84	5	202	47	3	3	45	1.37
299081--299163	27	2.9	28	80	5	87	46	3	3	45	1.37
299466--299525	31	1.9	32	86	6	88	58	1	1	38	1.18
302320--302360	2	20.5	2	100	0	82	0	48	0	51	1.00
302360--302395	2	18.0	2	100	0	72	50	0	0	50	1.00
303760--303793	17	2.1	16	88	5	50	38	0	0	61	0.96
303861--303938	35	2.3	35	95	2	140	62	7	3	25	1.39
304793--304842	4	13.2	4	76	19	54	72	0	0	28	0.86
304808--304842	11	3.2	11	100	0	70	71	0	0	28	0.86
304846--304899	15	3.8	14	76	18	58	3	22	0	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304844--304891	18	2.6	18	81	12	53	4	20	0	75	0.97
306600--306631	2	16.0	2	100	0	64	0	50	0	50	1.00
309431--309459	10	2.9	10	100	0	58	27	0	0	72	0.85
312101--312155	28	1.9	29	85	3	76	49	0	0	50	1.00
312559--312588	2	15.0	2	100	0	60	50	0	0	50	1.00
315775--315803	3	9.7	3	100	0	58	31	0	0	68	0.89
316122--316154	18	1.9	17	88	11	50	36	0	9	54	1.32
316196--316282	35	2.5	36	76	10	83	56	0	1	42	1.07
316870--316911	16	2.6	17	81	11	52	50	0	2	47	1.14
317865--317894	15	1.9	16	93	6	53	76	0	0	23	0.78
318764--318806	21	2.2	19	87	8	59	72	0	2	25	0.97
318766--318801	14	2.7	13	87	8	54	77	0	2	19	0.88
319211--319251	20	2.0	20	90	0	64	56	0	0	43	0.99
319277--319319	11	3.8	11	75	6	50	2	23	0	74	0.93
320323--320386	27	2.3	28	84	10	87	60	3	0	35	1.12
320946--321038	39	2.5	38	78	13	95	63	2	0	34	1.07
321011--321053	14	3.1	14	82	0	50	67	0	0	32	0.91
320964--321038	37	2.0	39	82	10	93	62	2	0	34	1.09
322119--322152	15	2.5	13	86	13	50	20	0	17	61	1.34
323805--323843	20	1.9	21	84	5	53	46	2	5	46	1.38
327506--327555	19	2.6	19	80	0	55	22	16	6	56	1.62
329660--329697	19	2.0	19	85	10	51	52	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329825--329876	17	3.1	17	73	13	54	36	0	0	63	0.95
329825--329877	16	3.2	16	74	10	54	37	0	0	62	0.96
330108--330137	2	15.0	2	100	0	60	50	0	0	50	1.00
333167--333197	3	10.3	3	100	0	62	67	0	0	32	0.91
333620--333649	3	10.0	3	100	0	60	33	0	0	66	0.92
333771--333795	4	6.2	4	100	0	50	76	0	0	24	0.80
333955--333994	3	13.3	3	100	0	80	32	0	0	67	0.91
334180--334225	7	6.4	7	85	5	65	73	0	0	26	0.83
334177--334250	15	4.7	15	76	15	78	67	2	1	28	1.12
335372--335418	23	2.0	23	84	15	62	48	2	0	48	1.13
336110--336138	12	2.4	12	100	0	58	48	0	0	51	1.00
337562--337593	2	16.0	2	100	0	64	50	0	0	50	1.00
345544--345759	116	1.9	116	84	7	296	37	15	11	36	1.83
346840--347249	79	5.1	80	72	11	332	38	18	11	30	1.87
346964--346990	14	1.9	14	100	0	54	59	11	7	22	1.56
346808--347153	170	2.0	170	97	1	658	40	17	12	29	1.86
349053--349143	29	3.1	29	70	17	80	45	6	12	36	1.68
349044--349153	58	1.9	58	84	3	150	46	7	10	35	1.67
350546--350579	17	2.1	16	89	10	52	61	0	2	35	1.11
350798--350835	2	19.5	2	94	5	69	0	50	0	50	1.00

Tables:   1   2   3

The End!