genome.fa.s288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold288
Parameters: 2 7 7 80 10 50 1000
Length:  358258

Tables:   1   2   3   

This is table  1  of  3  ( 326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3970--4040	27	2.6	27	86	6	90	46	23	5	23	1.74
5135--5173	20	1.9	20	85	15	53	41	0	0	58	0.98
5474--5618	16	8.8	16	71	19	77	40	0	0	58	1.08
5448--5614	25	6.7	25	75	11	130	37	0	1	60	1.12
5456--5605	45	3.2	50	80	14	146	38	0	2	59	1.14
5488--5615	9	14.0	9	74	20	90	37	0	0	60	1.08
5488--5610	20	6.3	20	75	15	91	37	0	0	60	1.08
5485--5610	36	3.6	36	73	20	113	38	0	0	60	1.08
7247--7324	22	3.4	23	72	12	54	21	3	10	64	1.41
7815--7902	34	2.6	34	96	1	158	68	0	28	3	1.06
8922--8964	17	2.4	18	80	11	52	46	0	0	53	1.00
9103--9156	27	2.0	29	82	10	69	53	1	0	44	1.11
13227--13534	48	6.5	48	86	4	412	35	18	25	20	1.95
13227--13534	95	3.3	94	88	3	424	35	18	25	20	1.95
13222--13540	143	2.3	140	88	3	469	35	18	25	21	1.95
13605--13729	28	4.4	27	80	9	126	25	19	26	28	1.98
13605--13729	56	2.2	58	85	8	168	25	19	26	28	1.98
13736--14043	48	6.5	48	86	4	412	35	18	25	20	1.95
13736--14043	95	3.3	94	88	3	424	35	18	25	20	1.95
13736--14049	143	2.2	140	89	2	468	35	18	25	21	1.95
14113--15149	32	34.1	28	80	8	343	22	19	28	29	1.98
14113--15149	64	17.1	56	78	11	426	22	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14289--15161	32	28.2	32	84	4	978	21	19	29	29	1.98
14220--15160	150	6.1	152	85	3	1106	21	19	29	29	1.98
14248--15163	282	3.3	275	85	5	1084	22	18	29	29	1.98
26844--26869	2	13.0	2	100	0	52	50	0	0	50	1.00
28267--28327	13	4.8	12	78	9	68	49	1	3	45	1.28
28267--28327	25	2.4	25	81	10	70	49	1	3	45	1.28
29602--29657	29	2.0	28	82	10	69	48	0	0	51	1.00
30539--30589	22	2.3	22	79	0	57	60	0	1	37	1.08
31584--31612	2	14.5	2	100	0	58	51	0	0	48	1.00
33850--33878	2	15.0	2	92	7	51	48	0	0	51	1.00
39400--39475	27	2.9	27	86	2	91	27	9	18	44	1.80
39553--39626	13	5.7	13	81	10	55	16	36	6	40	1.75
39592--39625	13	2.6	13	100	0	68	8	41	5	44	1.60
40993--41383	204	1.9	205	96	0	721	31	17	22	27	1.97
44209--44286	27	2.9	27	84	3	95	24	10	20	44	1.82
44243--44312	27	2.8	24	83	14	72	27	10	18	44	1.81
44391--44424	13	2.6	13	100	0	68	8	41	5	44	1.60
45351--45387	17	2.2	17	95	0	65	27	21	21	29	1.99
48039--48078	16	2.6	16	92	4	64	27	22	15	35	1.94
48500--48622	14	9.3	14	69	23	70	38	0	1	60	1.07
48507--48611	15	6.2	18	65	26	68	37	0	0	61	1.02
48501--48582	33	2.6	32	83	11	89	40	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48507--48622	20	6.3	18	69	20	71	37	0	1	61	1.07
49254--49326	27	2.7	28	82	6	96	30	6	16	46	1.73
53807--53906	27	3.7	27	90	0	137	24	8	22	46	1.78
54408--54472	23	3.1	23	66	25	70	26	0	16	56	1.40
54381--54472	40	2.3	40	96	0	166	25	1	18	55	1.49
54393--54456	17	3.4	17	69	22	56	23	0	23	53	1.47
54523--54563	21	2.0	20	85	4	55	26	2	4	65	1.25
58383--58465	1	83.0	1	78	0	67	0	7	6	86	0.70
58389--58452	22	2.9	22	83	2	74	0	9	6	84	0.78
58385--58467	28	3.0	28	91	5	134	0	9	6	84	0.78
58383--58465	38	2.2	36	83	12	98	0	7	6	86	0.70
59085--59210	62	2.0	62	100	0	252	68	9	6	15	1.37
75221--75295	20	3.7	20	77	7	78	37	10	14	37	1.81
77038--77063	2	13.0	2	100	0	52	50	0	0	50	1.00
77930--77969	21	1.9	21	100	0	80	22	10	25	42	1.84
93102--93202	28	3.4	29	73	16	84	51	0	0	48	1.00
93282--93357	19	3.8	19	70	19	57	38	0	0	61	0.96
93279--93400	41	3.1	38	81	13	126	41	0	0	57	1.04
93288--93396	39	2.9	39	82	17	110	39	0	0	59	1.04
93307--93382	25	3.0	24	79	12	80	42	0	0	57	0.98
93322--93389	30	2.4	28	87	9	93	39	1	0	58	1.07
93694--93734	17	2.5	17	92	7	68	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93689--93734	15	2.9	15	84	12	65	47	0	0	52	1.00
93689--93739	16	3.1	16	78	13	59	47	0	0	52	1.00
93712--93761	26	1.9	26	84	8	66	52	0	0	48	1.00
93723--93765	22	1.9	23	85	4	61	55	0	0	44	0.99
93702--93776	13	5.4	14	73	12	57	53	0	0	46	1.00
93789--93874	33	2.5	33	80	14	95	63	0	3	32	1.11
93818--93878	27	2.2	29	85	8	83	63	0	3	32	1.10
93821--93890	27	2.6	26	79	18	72	62	1	4	31	1.23
93883--93945	32	1.9	32	87	3	90	52	1	1	44	1.20
95358--95435	38	2.0	38	81	16	90	58	7	5	28	1.47
95472--95519	8	5.9	8	87	2	69	0	16	0	83	0.65
95575--95626	19	2.8	19	85	8	63	63	0	0	36	0.95
96184--96230	25	2.0	23	83	8	58	51	2	0	46	1.13
96428--96495	32	2.1	32	83	8	84	50	2	2	44	1.32
96919--96972	16	3.2	16	78	19	65	62	1	0	35	1.06
96902--97019	21	5.9	21	64	24	58	55	1	0	42	1.16
96978--97019	22	2.0	22	85	4	59	50	2	0	47	1.14
96899--97025	39	3.3	38	76	11	125	55	1	0	41	1.14
96899--97053	39	4.0	39	74	12	117	56	1	0	41	1.12
96902--97050	79	1.9	78	81	12	180	57	1	0	40	1.12
97722--97769	11	4.7	11	78	21	52	37	0	0	62	0.95
97735--97795	15	4.1	15	72	15	56	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97774--97845	32	2.4	30	77	9	76	45	0	0	54	0.99
97735--97824	47	2.0	44	82	10	110	45	0	0	54	0.99
97782--97840	32	1.9	31	83	10	77	49	0	0	50	1.00
98598--98654	21	2.6	22	81	13	64	40	0	0	59	0.97
100758--100800	17	2.4	18	84	3	52	67	2	2	27	1.15
101114--101153	16	2.4	18	84	16	59	52	10	7	30	1.62
101825--101884	11	5.1	11	72	20	50	70	0	0	30	0.88
101820--101889	27	2.5	28	76	4	70	68	1	0	30	0.98
101930--101972	8	5.4	8	80	0	50	0	18	2	79	0.85
101934--101983	16	3.1	16	83	8	57	0	20	4	76	0.95
102081--102132	27	1.9	27	84	7	70	59	7	15	17	1.58
105132--105177	2	23.0	2	100	0	92	50	0	0	50	1.00
107790--107837	15	2.9	16	78	12	53	0	22	4	72	1.01
107856--107880	12	2.1	12	100	0	50	0	8	0	92	0.40
108817--108861	20	2.2	20	84	7	56	75	0	22	2	0.91
108817--108854	18	2.0	20	85	10	53	76	0	21	2	0.91
108816--108859	14	2.9	15	83	10	54	75	0	22	2	0.92
108910--108955	25	1.9	25	82	8	60	26	0	0	73	0.83
109043--109076	16	2.1	17	88	5	52	29	2	0	67	1.05
110422--110455	2	17.0	2	100	0	68	50	0	0	50	1.00
111099--111325	114	2.0	114	97	0	427	36	8	17	37	1.81
115521--115563	18	2.3	18	84	11	52	41	2	2	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115677--115738	19	3.2	19	72	20	56	48	1	1	48	1.21
119524--119593	35	2.0	35	91	2	115	40	8	17	34	1.80
119942--119978	15	2.4	15	86	4	56	67	0	5	27	1.12
125533--125563	2	15.5	2	100	0	62	48	0	0	51	1.00
127488--127527	21	1.9	21	90	10	64	60	0	0	40	0.97
129784--129824	22	1.9	21	85	5	55	51	0	0	48	1.00
130303--130362	32	1.9	32	86	3	86	50	0	0	50	1.00
132923--132953	14	2.1	15	94	5	55	3	12	35	48	1.58
133798--133907	33	3.2	33	71	14	114	25	25	7	41	1.81
133825--133944	37	3.4	37	71	13	133	24	26	5	43	1.77

Tables:   1   2   3