genome.fa.s292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold292
Parameters: 2 7 7 80 10 50 1000
Length:  327286

Tables:   1   2   3   

This is table  1  of  3  ( 264 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2627--2683	13	4.8	11	80	16	69	42	0	1	56	1.10
2627--2683	24	2.4	24	91	5	89	42	0	1	56	1.10
4834--4884	20	2.5	20	87	6	68	39	11	17	31	1.86
5763--5804	15	2.8	16	78	10	52	45	0	0	54	0.99
6264--6303	2	21.0	2	90	10	66	50	0	0	50	1.00
11170--11218	20	2.6	19	78	21	50	61	0	0	38	0.96
15267--15320	20	2.7	20	82	8	65	37	12	18	31	1.89
15290--15344	21	2.7	21	80	2	58	38	14	16	30	1.89
17842--17890	23	2.3	20	75	18	53	63	10	10	16	1.52
17847--17899	23	2.3	23	93	0	88	62	11	9	16	1.54
18808--18882	20	3.8	19	80	7	87	38	12	14	34	1.83
19476--19970	32	15.5	32	94	1	854	16	18	33	30	1.94
19953--20720	27	28.0	27	87	3	1045	29	13	32	23	1.94
19953--20720	82	9.3	81	89	2	1045	29	13	32	23	1.94
19953--20720	55	14.0	54	87	3	1045	29	13	32	23	1.94
28162--28210	23	2.3	20	75	18	53	63	10	10	16	1.52
28167--28219	23	2.3	23	96	0	97	60	11	11	16	1.59
29128--29202	20	3.8	19	80	7	87	38	12	14	34	1.83
33004--33153	80	1.9	80	81	5	187	33	8	30	28	1.87
33229--33342	52	2.2	52	81	6	124	35	9	27	27	1.88
33149--33421	131	2.1	131	83	5	340	34	9	25	30	1.88
33298--33485	77	2.4	77	80	11	197	34	8	26	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36118--36165	21	2.3	21	82	3	62	31	16	22	29	1.96
36366--36400	2	17.5	2	100	0	70	48	0	0	51	1.00
36706--36866	79	2.0	82	82	10	199	48	14	16	21	1.81
44012--44071	30	2.0	30	83	6	77	60	0	3	36	1.14
44107--44157	9	5.3	9	74	21	50	33	0	0	66	0.92
44112--44151	12	3.2	12	86	6	53	32	0	0	67	0.91
44107--44157	21	2.6	19	90	9	77	33	0	0	66	0.92
44115--44171	28	2.0	28	83	12	73	31	1	1	64	1.13
47596--47626	2	15.5	2	93	0	53	51	0	0	48	1.00
48057--48097	15	2.8	15	88	3	57	39	2	0	58	1.11
49071--49104	17	2.1	16	89	10	52	32	11	11	44	1.77
49883--49929	3	15.7	3	100	0	94	65	0	0	34	0.93
49974--50041	34	2.0	33	83	11	84	51	0	0	48	1.00
50339--50376	2	19.0	2	88	0	58	0	44	2	52	1.14
50378--50405	2	14.0	2	100	0	56	50	0	0	50	1.00
51982--52028	15	3.0	16	81	6	51	42	2	0	55	1.12
52697--52730	7	4.6	7	92	7	50	38	0	0	61	0.96
52693--52738	15	3.1	16	84	15	71	39	0	0	60	0.97
52697--52739	22	1.9	23	81	13	54	37	0	0	62	0.95
52719--52770	24	2.2	24	83	10	63	25	3	1	69	1.16
53942--54009	32	2.1	32	86	5	93	44	0	0	55	0.99
53965--54073	7	15.6	7	67	17	66	33	1	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53979--54058	23	3.5	23	81	3	90	31	1	0	67	0.99
53998--54072	39	1.9	39	86	7	109	28	2	0	69	1.02
54368--54422	24	2.3	24	84	9	85	56	1	3	38	1.28
54431--54493	26	2.5	26	81	2	83	52	0	0	47	1.00
54478--54517	13	3.1	13	86	10	55	57	0	0	42	0.98
54555--54607	16	3.3	16	71	10	54	30	0	13	56	1.37
54631--54679	19	2.7	20	78	15	61	42	0	0	57	0.99
54626--54659	15	2.2	16	94	5	61	38	0	0	61	0.96
54602--54677	40	1.9	39	86	7	109	42	0	1	56	1.07
54900--55009	32	3.4	34	80	8	104	59	0	0	39	1.10
54929--55015	16	5.2	16	68	21	63	59	0	0	40	0.97
54920--55022	16	6.5	16	66	27	51	61	0	0	38	0.96
54915--55016	33	3.0	34	80	8	111	61	0	0	38	0.96
54915--55021	22	4.9	22	69	21	73	60	0	0	39	0.97
54936--55036	16	6.4	16	69	24	56	58	0	0	40	1.05
55398--55497	38	2.6	39	74	13	93	43	1	1	55	1.13
55418--55491	20	3.9	20	69	22	61	47	1	0	51	1.09
55408--55497	39	2.4	36	75	14	92	43	1	0	55	1.07
55617--55700	26	3.4	26	77	15	115	42	11	5	39	1.66
55602--55699	47	2.1	47	100	0	196	42	12	6	38	1.67
55602--55673	21	3.2	21	75	17	81	43	12	5	38	1.66
55630--55701	21	3.2	21	67	17	63	44	12	5	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56656--56706	20	2.7	20	73	8	54	47	0	0	52	1.00
56624--56711	21	3.7	26	65	23	61	53	0	0	46	1.00
56630--56724	46	2.1	44	81	15	104	52	0	0	47	1.00
58405--58448	19	2.4	18	80	3	52	50	2	0	47	1.13
62223--62271	15	3.3	15	78	16	57	32	6	0	61	1.21
63531--63789	50	5.2	50	84	0	331	33	17	18	30	1.94
67833--67882	19	2.6	19	83	0	64	34	22	20	24	1.97
68134--68393	50	5.2	50	86	3	353	33	20	18	28	1.95
71195--71239	22	2.0	24	86	8	67	40	0	0	60	0.97
71199--71240	15	2.8	14	89	10	57	40	0	0	59	0.97
72096--72120	9	2.8	9	100	0	50	52	12	0	36	1.39
73250--73325	32	2.4	32	84	4	91	48	7	3	39	1.51
73345--73410	24	2.6	24	83	7	69	37	9	1	51	1.43
75103--75143	15	2.6	16	77	18	50	65	4	0	29	1.13
75619--75677	10	5.5	10	76	11	55	40	0	1	57	1.09
75708--75751	20	2.1	20	87	8	61	68	0	0	31	0.90
76075--76109	14	2.4	15	95	4	63	77	0	0	22	0.78
77374--77405	13	2.4	14	90	10	50	59	0	0	40	0.97
86335--86393	10	5.8	10	75	15	50	74	1	23	0	0.91
88024--88664	80	8.0	80	76	7	478	30	24	10	35	1.89
88012--88649	241	2.6	240	77	8	598	30	24	10	34	1.89
88012--88664	161	4.1	160	81	4	690	30	24	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94371--94510	52	2.7	52	78	1	138	31	13	12	42	1.81
96754--96942	97	2.0	96	89	1	288	26	20	12	40	1.88
103168--103647	28	16.6	28	79	7	390	22	16	31	29	1.96
103140--103642	146	3.5	146	80	8	458	22	16	31	29	1.96
103152--103556	202	2.0	206	83	4	516	21	17	31	29	1.96
103652--103725	13	5.6	13	75	22	66	37	14	13	33	1.86
104914--104963	18	2.8	17	85	11	64	2	0	12	86	0.67
104917--104963	10	5.0	9	82	17	60	2	0	12	85	0.70
110949--110993	15	3.0	15	76	0	54	15	0	42	42	1.47
120243--120284	20	2.1	20	95	0	75	47	9	11	30	1.72
122464--122517	19	2.7	20	85	5	74	38	11	16	33	1.84
122570--122594	13	1.9	13	100	0	50	36	16	8	40	1.77
130863--131044	31	5.9	31	78	9	183	26	30	15	27	1.96
130869--131044	61	2.8	60	82	10	214	27	30	15	26	1.96
130985--131164	94	1.9	94	80	6	213	23	30	10	35	1.89
131105--131281	67	2.6	68	80	8	200	20	30	11	37	1.89
130866--131281	34	12.9	33	73	15	188	23	30	12	32	1.92
131220--131327	34	3.6	28	82	10	110	23	32	15	28	1.95
131391--132394	101	10.0	101	89	2	1431	22	25	17	34	1.96
133133--133217	19	4.7	19	75	19	83	37	11	15	35	1.84
133155--133225	32	2.2	32	94	0	124	36	12	15	35	1.86
133251--133315	33	2.0	33	81	6	78	30	15	12	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136684--136774	45	2.0	45	100	0	182	54	13	13	18	1.70
143559--143620	23	2.7	23	78	12	56	1	25	0	72	0.94
144404--144433	8	3.9	8	91	8	53	13	0	10	76	1.01
144404--144432	15	1.9	15	100	0	58	13	0	10	75	1.04
144787--144885	28	3.6	28	83	8	130	19	17	28	35	1.94
144833--144909	24	3.1	24	85	9	84	19	18	28	33	1.95
144858--144954	26	3.8	26	79	6	101	19	16	26	37	1.93
144905--144960	26	2.2	26	83	0	67	23	17	19	39	1.92
144950--145010	28	2.2	28	93	0	104	19	21	29	29	1.98
144957--145176	28	7.9	28	71	5	142	21	17	28	32	1.96

Tables:   1   2   3