genome.fa.s296.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold296
Parameters: 2 7 7 80 10 50 1000
Length:  679504

Tables:   1   2   3   4   

This is table  2  of  4  ( 375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160232--160260	10	2.7	11	94	5	51	34	13	0	51	1.42
329625--330378	156	4.8	156	79	8	592	37	19	19	23	1.94
329634--330288	156	4.2	156	79	6	607	36	20	19	23	1.95
329625--330288	312	2.1	310	80	4	748	36	20	19	23	1.95
330091--330378	155	1.9	156	83	5	386	37	18	19	25	1.94
330963--331293	130	2.5	130	84	6	431	43	10	9	36	1.72
331321--331585	127	2.1	130	89	4	403	40	12	11	35	1.80
331025--331749	292	2.5	292	87	4	996	41	10	11	36	1.76
331456--331905	164	2.8	164	96	0	823	38	10	13	37	1.79
332865--332903	16	2.5	15	80	8	51	23	7	5	64	1.40
332872--332907	16	2.2	16	90	0	54	25	5	5	63	1.38
334829--335677	155	5.5	154	80	4	775	23	18	20	37	1.94
334828--335526	312	2.3	309	79	4	712	22	18	21	37	1.94
337489--337773	155	1.8	154	82	3	367	24	16	20	39	1.91
337536--338226	156	4.5	154	75	11	544	23	18	20	36	1.95
337725--338287	301	1.9	302	81	4	688	24	19	21	34	1.96
345387--345452	33	2.0	33	82	5	80	42	13	12	31	1.81
346952--347044	45	2.1	45	97	0	177	32	17	5	45	1.71
358426--358464	13	3.0	13	88	0	60	30	12	12	43	1.81
360906--360930	13	1.9	13	100	0	50	32	20	16	32	1.94
360888--360949	32	1.9	32	86	3	88	29	17	14	38	1.89
360919--360974	21	2.8	21	89	5	80	37	14	16	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361001--361067	33	2.0	32	86	11	91	35	11	17	34	1.87
365446--365488	1	43.0	1	85	0	50	90	9	0	0	0.45
365444--365571	12	10.7	11	72	18	96	81	12	3	2	0.93
365444--365560	10	10.5	10	72	21	65	81	12	4	1	0.92
365446--365571	25	5.2	23	75	13	103	81	11	3	2	0.92
366809--367612	28	28.3	28	84	5	904	28	29	18	23	1.98
366814--367609	113	7.0	112	86	4	907	28	29	18	23	1.98
368522--368780	20	11.8	20	72	17	185	30	13	13	41	1.84
368512--368807	71	4.3	70	82	11	360	30	15	12	41	1.84
368595--368779	40	4.8	40	79	14	228	31	12	13	41	1.82
368512--368720	72	2.9	72	92	2	341	30	15	12	41	1.84
368512--368830	131	2.3	131	82	7	334	30	14	13	41	1.84
375872--375928	20	2.8	21	78	7	73	38	15	15	29	1.89
375828--375999	71	2.4	70	86	5	229	40	15	16	27	1.88
375943--376019	20	3.8	20	86	6	120	38	12	16	31	1.87
376720--376843	49	2.7	45	79	7	122	32	16	27	23	1.96
376739--376843	45	2.2	48	81	6	126	33	16	28	21	1.95
376922--377107	29	6.4	29	91	4	297	24	16	30	29	1.97
376922--377107	57	3.2	57	90	6	295	24	16	30	29	1.97
383763--383821	32	1.9	30	83	13	75	59	10	10	20	1.58
384092--384117	13	2.0	13	100	0	52	30	15	15	38	1.88
384072--384135	32	2.0	33	87	9	96	29	12	15	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388754--388784	15	2.1	15	93	0	53	12	22	16	48	1.80
390587--390631	21	2.1	21	84	8	56	22	20	4	53	1.63
396469--396575	55	1.9	57	88	3	164	22	20	13	43	1.86
396811--396935	45	2.8	45	91	2	198	56	14	24	4	1.57
396850--396886	17	2.1	18	90	5	58	59	10	24	5	1.52
396895--396931	17	2.1	18	90	5	58	56	13	24	5	1.58
397105--397226	40	3.0	40	75	2	120	28	39	18	13	1.88
397262--397303	22	1.9	22	90	0	66	28	45	14	11	1.80
397261--397310	22	2.3	22	82	0	64	28	46	14	12	1.79
399991--400032	21	2.0	21	85	0	57	26	21	26	26	1.99
402258--402959	79	8.9	77	80	7	639	32	11	25	29	1.92
402259--402959	315	2.2	315	83	6	873	32	11	25	29	1.92
405999--406436	117	3.6	120	85	5	573	26	19	27	26	1.99
405999--406440	59	7.4	60	86	5	558	26	19	27	26	1.99
407439--407499	15	3.9	15	86	4	86	0	0	18	81	0.68
407438--407499	23	2.7	24	82	14	85	0	0	17	82	0.67
407421--407499	7	10.9	7	79	12	70	0	3	13	82	0.81
407439--407506	25	2.8	24	82	14	86	0	0	17	82	0.67
409972--410039	33	2.1	33	100	0	136	23	25	8	42	1.82
410573--410610	19	2.0	19	100	0	76	36	21	10	31	1.87
414845--414916	20	3.7	19	84	3	81	29	13	15	41	1.85
415380--415423	23	1.9	23	81	9	54	31	6	22	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416567--416599	12	2.8	12	90	0	57	45	0	27	27	1.54
417019--417066	15	3.1	15	84	6	60	54	2	12	31	1.49
427750--427895	50	2.9	51	89	2	231	42	10	19	28	1.83
429817--429891	31	2.4	31	82	4	89	16	13	42	28	1.85
430052--430175	45	2.8	44	85	2	158	8	25	12	53	1.68
430393--430451	30	2.0	30	86	6	84	40	11	22	25	1.88
430423--430572	55	2.7	55	95	0	264	46	13	19	21	1.84
430643--430698	24	2.3	24	84	6	78	12	1	7	78	1.02
431205--431646	85	5.1	87	77	6	348	39	17	25	17	1.91
431251--432753	42	35.5	42	68	8	535	34	18	27	19	1.95
431282--431384	43	2.4	42	83	3	134	34	24	27	13	1.93
431368--431645	87	3.2	85	85	5	353	39	16	25	19	1.92
431368--431645	88	3.2	87	88	2	373	39	16	25	19	1.92
431239--432755	84	17.9	83	75	7	890	34	18	27	19	1.95
431251--432758	168	8.9	167	75	5	1053	34	18	28	19	1.95
435938--436051	59	1.9	59	87	3	167	22	26	6	44	1.76
437947--438038	40	2.3	40	92	0	157	27	14	17	41	1.88
440756--440795	20	2.0	21	90	5	64	32	5	12	50	1.62
446819--446856	13	2.9	13	96	0	67	34	18	15	31	1.92
446923--446948	13	2.0	13	100	0	52	38	15	15	30	1.88
447913--447938	13	2.0	13	100	0	52	30	15	15	38	1.88
447922--447978	19	2.9	19	84	2	78	29	15	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448008--448072	33	2.0	33	87	6	96	33	12	18	35	1.88
451009--451034	10	2.6	10	100	0	52	30	0	26	42	1.56
454865--454942	20	3.8	19	79	14	84	37	12	11	38	1.80
459642--459666	13	1.9	13	100	0	50	36	16	16	32	1.90
459622--459688	33	2.0	33	88	0	98	32	11	14	40	1.83
459731--459755	13	1.9	13	100	0	50	32	16	16	36	1.90
459764--459838	32	2.3	32	97	0	141	30	20	21	28	1.98
459795--459920	52	2.4	52	91	0	198	36	17	16	29	1.92
465548--465595	24	2.0	24	84	8	62	79	6	10	4	1.05
466751--466815	33	2.0	33	87	6	96	35	13	16	33	1.89
473603--473785	79	2.3	77	81	8	217	34	13	24	27	1.92
473728--473837	51	2.2	51	85	4	143	35	12	20	30	1.90
473853--473966	51	2.2	51	84	1	138	32	10	25	31	1.90
473642--474047	129	3.1	128	84	3	485	33	13	24	28	1.93
476365--476418	20	2.7	20	97	0	99	46	14	12	25	1.81
476316--476469	70	2.2	70	88	1	220	43	15	14	26	1.85
477067--477426	61	5.9	61	84	2	429	28	20	26	25	1.99
477094--477426	123	2.7	122	89	1	479	28	19	26	25	1.99
477068--477454	184	2.1	177	84	5	490	28	19	25	26	1.99
478534--478573	11	3.5	11	86	10	53	0	2	10	87	0.63
478544--478583	19	2.1	19	90	0	62	2	2	7	87	0.71
490945--491129	79	2.3	80	80	8	209	32	13	27	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491059--491179	51	2.4	51	86	4	163	31	11	27	29	1.92
491020--491387	131	2.8	129	86	3	513	33	12	25	28	1.92
493651--493780	49	2.6	50	90	2	192	41	14	16	27	1.87
494529--494578	22	2.4	22	84	15	63	34	20	0	46	1.51
496904--496957	19	2.8	19	86	10	74	29	16	16	37	1.91
496986--497039	20	2.7	21	88	11	78	33	16	16	33	1.92
498298--498799	97	5.2	97	78	8	413	21	27	14	36	1.92
498381--498782	63	6.3	63	76	8	244	20	27	14	37	1.92
498590--498771	96	1.9	96	86	4	260	21	27	15	35	1.93
498311--498782	33	14.8	33	74	8	329	20	27	15	36	1.93

Tables:   1   2   3   4