genome.fa.s301.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold301
Parameters: 2 7 7 80 10 50 1000
Length:  562684

Tables:   1   2   3   4   

This is table  4  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512518--512574	22	2.6	22	89	10	91	64	8	8	17	1.46
513485--513559	20	3.8	19	80	7	87	40	13	13	33	1.83
513482--513559	40	2.0	39	89	2	120	39	14	12	33	1.84
516471--516508	9	4.2	9	83	10	51	86	10	2	0	0.66
516746--516796	14	3.4	16	71	17	56	80	9	9	0	0.91
516747--516812	28	2.3	28	82	10	80	80	9	9	1	0.97
517761--517888	31	3.8	34	80	7	109	21	31	14	33	1.92
517896--518011	28	4.0	27	72	20	90	21	34	14	29	1.93
517864--518048	61	3.0	62	88	6	266	21	34	13	31	1.92
517933--518277	97	3.5	100	86	5	479	20	32	13	33	1.91
518283--518385	32	3.2	32	87	5	163	29	36	16	17	1.92
518437--519259	43	18.0	43	80	10	791	25	25	18	29	1.98
518388--519305	92	9.9	92	88	4	1221	25	25	17	30	1.98
518957--519024	21	3.2	21	62	25	52	25	29	17	27	1.97
519215--519353	52	2.6	52	81	4	161	24	25	15	34	1.95
519319--519445	67	1.9	68	86	1	184	23	25	12	38	1.90
520186--520274	13	5.9	13	72	27	70	34	13	17	33	1.89
520166--520298	32	4.1	32	97	0	239	33	12	18	35	1.88
529223--529274	13	3.5	13	73	26	50	36	17	13	32	1.89
529231--529312	19	4.6	19	81	17	113	36	18	12	32	1.88
529223--529293	32	2.2	32	97	0	133	36	18	12	32	1.88
532194--532220	14	1.9	14	100	0	54	40	29	0	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534729--534758	13	2.3	13	94	0	51	36	16	13	33	1.88
534714--534778	33	2.0	33	87	6	96	35	15	18	30	1.92
534743--534780	20	1.9	19	94	5	67	36	18	18	26	1.94
534622--534875	96	2.7	96	93	1	413	32	19	16	30	1.95
534810--534874	33	2.0	33	87	0	94	38	12	15	33	1.85
542760--542865	38	2.8	38	87	8	139	37	1	18	41	1.62
543421--543493	20	3.7	19	87	7	85	28	15	17	38	1.90
545326--545372	22	2.1	22	92	0	76	40	0	27	31	1.57
547763--547788	13	2.0	13	100	0	52	38	15	15	30	1.88
547741--547808	33	2.1	32	94	2	118	32	13	17	36	1.89
547842--547893	20	2.6	20	90	0	77	30	15	11	42	1.82
548941--549406	89	5.2	89	89	2	659	21	23	16	38	1.93
548941--549406	179	2.6	178	87	2	668	21	23	16	38	1.93
549574--549714	43	3.3	43	75	9	144	17	32	17	33	1.93
549571--549694	42	2.9	42	75	10	126	16	33	15	34	1.91
550753--551794	166	6.3	164	84	4	1232	28	12	7	51	1.67
552017--552062	9	4.9	10	79	10	53	21	0	0	78	0.76
552017--552062	19	2.5	18	89	3	65	21	0	0	78	0.76
552018--552062	14	3.3	14	87	9	58	22	0	0	77	0.76
552323--552373	22	2.3	23	83	12	63	66	0	23	9	1.21
553242--553292	19	2.6	20	84	3	68	29	7	17	45	1.77
553370--553498	52	2.5	52	96	0	240	35	18	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559021--559058	18	2.1	18	95	0	67	52	18	5	23	1.65
561189--561226	20	1.9	20	84	10	51	23	0	2	73	0.95
561371--561427	16	3.6	16	74	9	53	47	0	0	52	1.00

Tables:   1   2   3   4

The End!