genome.fa.s302.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold302
Parameters: 2 7 7 80 10 50 1000
Length:  555664

Tables:   1   2   3   4   

This is table  3  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321413--322096	61	11.4	61	78	13	645	25	28	19	26	1.99
321448--321796	55	6.0	55	80	12	369	25	28	20	25	1.99
321502--323217	306	5.8	305	76	15	1388	25	27	19	26	1.99
321816--322113	116	2.6	118	78	11	326	26	28	19	25	1.99
322121--322596	55	8.2	55	80	13	503	26	27	20	25	1.99
321972--322245	149	1.8	149	86	4	401	26	28	21	23	1.99
322116--322615	116	4.3	116	84	9	623	25	28	20	26	1.99
321413--323268	448	4.0	451	79	13	1555	25	27	19	26	1.99
322182--322606	238	1.8	237	87	6	560	26	27	20	25	1.99
322619--322809	55	3.4	55	85	9	258	29	28	17	24	1.97
322524--322709	94	2.0	95	86	5	261	26	32	16	24	1.96
322624--322875	55	4.3	60	81	9	256	28	26	18	26	1.98
322464--322751	155	1.9	151	85	10	393	27	30	17	25	1.97
322435--322812	210	1.8	209	90	2	616	27	29	18	24	1.98
322624--322869	61	4.2	55	80	9	240	28	26	18	26	1.98
322626--322875	116	2.1	117	84	5	328	28	26	18	26	1.98
322882--323268	62	6.3	60	84	6	442	25	26	19	28	1.99
322882--323268	122	3.2	120	81	7	483	25	26	19	28	1.99
322882--323268	184	2.1	183	83	5	487	25	26	19	28	1.99
323857--323920	19	3.7	19	76	23	86	29	12	18	39	1.88
323877--323933	13	3.9	13	76	24	60	33	14	17	35	1.90
323858--323957	32	3.1	32	95	0	173	31	12	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323856--323949	19	5.6	18	68	28	73	29	11	18	40	1.86
324005--324029	13	1.9	13	100	0	50	32	16	16	36	1.90
324038--324166	52	2.5	52	96	0	240	34	18	18	28	1.95
325004--325044	21	1.9	22	90	5	66	21	17	17	43	1.87
330112--330164	19	2.7	20	85	8	72	28	13	18	39	1.88
330112--330171	19	3.1	18	81	13	66	25	11	21	41	1.87
344917--344952	14	2.7	13	91	8	63	86	2	11	0	0.68
346399--346862	30	15.8	30	90	4	734	31	31	17	19	1.95
346397--346862	88	5.3	88	96	0	853	31	31	17	19	1.95
346843--346932	32	2.8	33	82	3	110	20	30	14	35	1.92
346929--347305	52	7.7	48	74	11	266	26	26	15	31	1.96
346926--347167	48	5.2	44	75	15	150	27	27	14	30	1.95
347020--347305	52	5.6	52	78	7	273	25	26	15	32	1.95
348087--348154	32	2.1	32	88	0	100	39	11	11	36	1.79
348106--348130	13	1.9	13	100	0	50	44	16	8	32	1.76
348066--348149	19	4.7	19	74	16	72	35	11	13	39	1.81
348202--348226	13	1.9	13	100	0	50	32	16	16	36	1.90
348181--348247	34	2.0	33	85	8	91	31	17	11	38	1.87
349148--350387	310	4.0	310	98	0	2399	29	19	14	35	1.92
352277--352560	51	5.6	51	82	1	336	34	11	23	30	1.91
352273--352556	153	1.9	153	86	2	410	33	11	24	29	1.91
354850--354880	13	2.4	13	94	0	53	38	16	12	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354831--354897	33	2.0	33	85	5	91	43	14	13	28	1.84
354934--354961	13	2.2	13	100	0	56	39	17	14	28	1.89
354916--354981	33	2.0	33	85	5	89	40	12	15	31	1.83
356038--356091	20	2.7	20	88	5	74	38	18	11	31	1.86
357896--357970	36	2.1	36	97	0	141	42	18	17	21	1.89
358044--358141	44	2.2	44	82	8	119	36	14	24	24	1.93
358372--358816	28	15.6	28	79	7	380	25	18	28	27	1.98
368767--369021	89	2.9	88	85	5	345	28	27	16	27	1.97
371334--371384	20	2.5	21	87	3	68	39	13	17	29	1.88
371447--371472	13	2.0	13	100	0	52	30	15	15	38	1.88
371427--371494	33	2.1	33	94	2	120	33	20	13	32	1.91
377370--377395	8	3.2	8	100	0	52	15	0	23	61	1.33
377598--377635	13	2.9	13	92	0	58	31	13	18	36	1.89
378070--378111	20	2.0	21	86	4	59	19	45	28	7	1.76
380142--380167	13	2.0	13	100	0	52	30	15	15	38	1.88
380122--380189	33	2.1	32	91	2	109	33	19	13	33	1.90
381890--381956	11	6.3	11	75	6	57	82	2	14	0	0.79
382054--382078	2	12.5	2	100	0	50	48	0	0	52	1.00
383646--383961	97	3.3	96	89	2	454	29	27	12	30	1.92
383802--384123	160	2.0	160	88	1	484	29	27	10	31	1.91
383899--384026	63	2.0	63	92	0	211	28	26	9	35	1.88
383962--384148	97	1.9	97	91	2	304	27	27	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388113--388138	13	2.0	13	100	0	52	30	15	15	38	1.88
388837--388880	21	2.1	21	83	8	54	27	31	2	38	1.69
389803--389841	13	3.0	13	96	0	69	35	15	17	30	1.91
389827--389905	20	3.7	20	78	15	77	44	15	15	25	1.85
391924--391954	15	2.1	15	93	0	53	12	22	16	48	1.80
393759--393803	21	2.1	21	84	8	56	22	20	4	53	1.63
395935--395964	15	1.9	16	93	6	53	33	13	6	46	1.69
396018--396043	13	2.0	13	100	0	52	30	15	15	38	1.88
399337--399971	28	21.9	28	85	6	693	28	29	17	24	1.97
399337--399971	57	11.0	56	83	7	693	28	29	17	24	1.97
400709--400738	14	2.1	14	100	0	60	13	26	16	43	1.85
402149--402484	97	3.5	97	88	1	512	29	30	12	28	1.93
403409--403444	15	2.4	15	90	0	54	52	11	8	27	1.65
406533--406601	8	8.4	8	71	28	56	72	1	4	21	1.10
406533--406600	7	9.4	7	73	22	52	72	1	4	22	1.11
406583--406641	26	2.3	26	77	13	68	71	6	6	15	1.29
406457--406710	141	1.8	141	93	1	447	68	4	7	18	1.31
407464--407505	3	14.0	3	94	0	75	64	2	0	33	1.07
418781--418813	16	2.1	16	100	0	66	27	30	6	36	1.81
419390--419430	20	2.0	20	85	0	55	46	0	2	51	1.14
423630--423669	21	2.0	20	85	14	55	62	5	0	32	1.17
430586--430744	81	2.0	78	91	3	255	37	18	10	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432127--432153	14	1.9	14	100	0	54	85	0	0	14	0.61
432158--432213	21	2.7	21	91	8	96	32	10	21	35	1.88
432249--432316	19	3.9	19	76	21	76	36	11	13	38	1.81
432270--432294	13	1.9	13	100	0	50	36	16	16	32	1.90
432251--432313	32	2.0	32	93	0	108	36	12	14	36	1.84
432336--432398	33	1.9	33	86	0	90	25	12	17	44	1.84
434745--435096	52	6.7	52	72	10	234	28	25	13	32	1.93
434854--434926	27	2.6	28	83	10	89	21	32	23	21	1.98
435118--435189	28	2.6	28	86	0	90	22	33	19	25	1.97
434740--435240	263	1.9	263	89	3	776	27	26	13	31	1.94
435143--435347	79	2.6	79	81	1	223	23	29	17	29	1.97
437297--437527	89	2.6	88	85	6	320	28	29	16	25	1.97
437297--437560	89	3.0	87	83	5	316	28	29	16	25	1.97
441021--443102	695	3.0	695	97	0	3914	33	16	15	35	1.90
448789--448828	13	3.1	13	88	0	62	40	15	12	32	1.84
450241--450268	3	9.3	3	100	0	56	0	67	0	32	0.91
450564--450617	21	2.5	22	82	8	67	22	3	18	55	1.58
451494--451523	13	2.3	13	94	0	51	36	16	10	36	1.82
451477--451545	33	2.1	32	84	10	86	33	14	15	36	1.89
454563--454630	22	3.0	23	79	12	88	7	23	0	69	1.14
454563--454626	11	5.7	11	76	14	60	7	21	0	70	1.12
462017--462044	13	2.2	13	100	0	56	39	17	14	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461999--462064	33	2.0	33	88	5	98	40	13	15	30	1.85
462973--463767	49	16.5	49	73	13	566	32	17	25	24	1.97
462973--463767	98	8.3	97	78	9	658	32	17	25	24	1.97
463303--463467	39	4.0	39	77	13	150	26	21	24	27	1.99
463254--463513	87	3.0	87	91	0	412	29	20	25	25	1.99
463342--463767	48	8.9	47	72	16	320	30	18	25	25	1.98
463537--463568	15	2.1	15	100	0	64	25	28	28	18	1.98
463552--463773	43	4.9	43	76	11	228	31	17	25	26	1.97
463552--463773	92	2.4	92	90	0	365	31	17	25	26	1.97
463764--464692	33	28.8	33	76	11	802	36	13	30	19	1.90

Tables:   1   2   3   4