genome.fa.s302.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold302
Parameters: 2 7 7 80 10 50 1000
Length:  555664

Tables:   1   2   3   4   

This is table  4  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463830--464207	185	2.0	186	88	2	564	38	12	28	20	1.89
464140--464692	34	16.8	33	77	10	386	35	13	31	18	1.90
464673--464850	31	5.6	31	87	7	227	29	16	30	23	1.96
466060--466107	11	4.5	11	81	5	62	0	0	16	83	0.65
466059--466107	22	2.3	22	89	3	73	0	0	16	83	0.64
470855--470904	25	2.0	25	88	7	75	14	20	42	24	1.88
473621--473645	13	1.9	13	100	0	50	36	16	16	32	1.90
473601--473665	33	2.0	33	90	0	103	35	15	16	32	1.91
474358--474413	19	2.8	20	86	2	78	30	12	16	41	1.85
474354--474414	20	3.1	19	79	6	68	32	11	16	39	1.84
474443--474507	33	2.0	33	90	0	103	35	12	16	35	1.87
476090--476120	3	10.3	3	92	0	53	35	0	35	29	1.58
482495--482581	44	2.0	44	95	0	156	43	2	13	40	1.57
483272--483296	13	1.9	13	100	0	50	36	16	16	32	1.90
484046--484402	178	2.0	178	100	0	714	35	22	12	30	1.91
484814--484905	46	2.0	46	100	0	184	30	10	19	39	1.86
484934--484996	32	1.9	33	90	3	101	42	11	12	33	1.78
486314--486412	51	1.9	51	86	11	141	36	6	23	34	1.79
486539--486682	51	2.8	50	81	10	184	38	11	18	30	1.87
488998--489154	20	7.8	19	71	17	104	41	14	16	27	1.87
489861--490017	68	2.3	68	92	0	260	32	28	1	37	1.68
492068--492110	21	2.1	20	82	4	50	55	18	2	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493598--493623	13	2.0	13	100	0	52	38	15	15	30	1.88
495836--495880	21	2.1	21	84	8	56	53	4	20	22	1.63
497684--497714	15	2.1	15	93	0	53	48	16	22	12	1.80
499794--499819	13	2.0	13	100	0	52	30	15	15	38	1.88
502373--502398	13	2.0	13	100	0	52	38	15	15	30	1.88
504853--504893	19	2.3	18	88	12	59	43	0	0	56	0.99
504889--504945	8	6.7	9	78	13	59	29	0	0	70	0.88
504889--504953	16	3.9	17	75	16	66	30	0	0	69	0.89
504882--504936	25	2.1	27	90	10	87	32	0	0	67	0.91
504890--504953	8	7.6	8	76	15	58	29	0	0	70	0.88
505417--505488	30	2.3	32	76	16	78	43	1	1	54	1.17
505462--505522	14	4.4	14	72	14	54	37	1	1	59	1.17
505517--505560	3	14.0	3	85	4	52	29	2	0	68	1.02
505514--505553	20	2.0	20	90	0	62	27	2	0	70	1.01
509036--509094	3	19.7	3	96	0	109	69	0	0	30	0.89
509923--509954	5	6.4	5	92	0	55	0	40	3	56	1.15
509916--509954	10	4.2	9	87	9	53	0	41	2	56	1.13
510461--510494	2	17.0	2	100	0	68	0	50	0	50	1.00
510638--510676	6	6.5	6	90	0	60	12	35	17	33	1.88
513309--513344	16	2.2	16	95	0	63	44	30	11	13	1.79
513659--513700	22	2.0	21	85	4	57	57	7	4	30	1.47
515051--515077	4	6.8	4	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515581--515611	2	15.5	2	100	0	62	48	0	0	51	1.00
516200--516229	2	15.0	2	92	0	51	50	3	0	46	1.18
516775--516804	2	15.0	2	100	0	60	50	0	0	50	1.00
519233--519289	22	2.5	21	83	8	60	28	3	10	57	1.48
519241--519289	22	2.2	23	85	3	64	30	2	10	57	1.43
519363--519498	50	2.7	50	89	4	202	31	16	22	30	1.95
519664--519699	14	2.6	14	95	0	63	13	16	0	69	1.19
522587--522884	146	2.0	146	100	0	596	31	16	24	27	1.96
524759--524841	22	3.8	22	74	3	69	31	10	4	53	1.57
527549--527592	2	22.0	2	100	0	88	50	0	0	50	1.00
528814--528838	13	1.9	13	100	0	50	32	16	16	36	1.90
528794--528858	33	2.0	33	88	11	98	33	18	15	32	1.92
528908--528934	13	2.1	13	100	0	54	40	14	14	29	1.86
528889--528951	32	1.9	33	87	9	94	41	14	15	28	1.87
529486--529534	16	3.2	16	72	16	50	61	0	2	36	1.08
534535--534560	13	2.0	13	100	0	52	30	15	15	38	1.88
537105--537143	13	3.0	13	96	0	69	35	15	17	30	1.91
537129--537207	20	3.7	20	78	15	77	44	15	15	25	1.85
539222--539252	15	2.1	15	93	0	53	12	22	16	48	1.80
540608--540633	13	2.0	13	100	0	52	30	15	15	38	1.88
543180--543216	13	2.8	13	95	0	65	37	16	16	29	1.90
543202--543280	20	3.7	20	78	15	77	44	15	15	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545295--545325	15	2.1	15	93	0	53	12	22	16	48	1.80
547129--547173	21	2.1	21	84	8	56	22	20	4	53	1.63
549854--549895	19	2.1	21	86	8	61	16	0	16	66	1.25
554178--554232	19	2.8	20	88	5	85	47	10	16	25	1.79

Tables:   1   2   3   4

The End!