genome.fa.s303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold303
Parameters: 2 7 7 80 10 50 1000
Length:  874694

Tables:   1   2   3   

This is table  1  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10946--10973	3	9.3	3	100	0	56	35	0	0	64	0.94
12657--12706	18	2.7	19	74	20	52	38	2	4	56	1.30
14384--14412	15	1.9	15	100	0	58	48	13	0	37	1.43
14380--14450	8	9.5	8	72	13	53	49	12	0	38	1.41
14422--14448	14	1.9	14	100	0	54	37	11	0	51	1.37
14713--14779	33	2.0	35	85	5	93	41	16	0	41	1.48
14812--14849	20	1.9	20	89	10	60	44	23	0	31	1.54
15174--15247	30	2.5	30	80	10	82	40	0	2	56	1.13
16396--16442	25	1.9	24	95	4	85	34	4	2	59	1.29
16388--16455	25	2.6	25	80	13	84	35	7	1	55	1.37
17894--17928	2	17.5	2	100	0	70	51	0	0	48	1.00
17933--17957	2	12.5	2	100	0	50	52	48	0	0	1.00
23194--23229	2	18.5	2	94	5	65	52	0	0	47	1.00
27333--27378	2	23.5	2	95	4	85	52	0	0	47	1.00
38101--38138	3	12.7	3	94	0	58	34	5	34	26	1.79
41676--41706	4	7.8	4	100	0	62	51	0	48	0	1.00
45508--45593	16	5.4	16	72	13	52	40	19	15	24	1.90
45475--45599	32	3.9	32	73	11	94	42	17	13	26	1.86
45553--45598	16	2.9	16	80	0	56	39	15	19	26	1.91
46740--46776	15	2.5	15	95	0	65	56	16	0	27	1.40
46957--46993	15	2.5	15	90	0	56	56	13	0	29	1.37
48055--48101	17	2.8	17	80	3	60	36	2	4	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48140--48190	18	2.9	18	80	14	61	37	0	1	60	1.08
48139--48347	13	14.9	14	68	19	57	38	0	2	58	1.15
48070--48346	40	7.0	39	70	18	141	36	0	3	59	1.18
48246--48290	20	2.1	21	88	8	65	26	0	4	68	1.08
48204--48304	17	5.6	17	78	12	87	32	0	1	65	1.04
48406--48471	22	2.7	25	79	13	75	45	1	4	48	1.32
48840--49002	16	9.6	16	65	16	60	41	2	3	52	1.30
48942--48992	22	2.4	22	81	15	70	43	0	0	56	0.99
48877--49016	53	2.6	54	81	8	153	45	2	1	50	1.25
48964--49025	15	3.9	15	75	19	54	43	1	0	54	1.09
50590--50620	2	15.5	2	100	0	62	48	0	0	51	1.00
50833--50858	1	26.0	1	100	0	52	100	0	0	0	0.00
57296--57321	3	8.7	3	100	0	52	69	0	0	30	0.89
60371--60414	21	2.1	21	100	0	88	50	18	18	13	1.79
65558--65656	3	32.7	3	83	13	123	29	1	1	68	1.03
66235--66323	24	3.5	24	69	24	74	47	1	5	46	1.33
67149--67173	2	12.5	2	100	0	50	52	0	0	48	1.00
83599--83632	12	2.8	12	90	0	59	50	0	8	41	1.34
83599--83632	6	5.7	6	92	0	50	50	0	8	41	1.34
84915--84942	2	14.0	2	100	0	56	50	0	50	0	1.00
85384--85408	5	5.0	5	100	0	50	20	20	20	40	1.92
85821--85861	20	2.0	22	85	9	59	39	2	9	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86490--86527	3	12.7	3	100	0	76	68	0	0	31	0.90
87475--87536	24	2.6	22	73	14	61	53	1	1	43	1.20
93271--93302	14	2.3	14	94	0	55	56	0	0	43	0.99
94266--94311	22	2.1	22	84	11	60	47	0	2	50	1.13
99705--99736	3	10.7	3	100	0	64	0	31	0	68	0.90
101733--101770	2	19.0	2	94	0	67	50	2	0	47	1.15
102568--102601	6	5.7	6	100	0	68	47	0	52	0	1.00
103415--103471	5	11.6	5	89	10	91	57	0	1	40	1.09
104029--104053	2	12.5	2	100	0	50	48	0	0	52	1.00
104949--104980	2	16.0	2	100	0	64	0	50	0	50	1.00
104980--105056	2	37.0	2	82	10	84	46	5	0	48	1.24
105888--105915	2	14.0	2	100	0	56	50	0	0	50	1.00
109092--109123	15	2.0	17	88	11	50	25	0	6	68	1.12
109773--109801	2	14.5	2	100	0	58	0	48	0	51	1.00
115295--115369	10	7.5	10	75	0	51	0	34	10	54	1.35
117134--117186	23	2.3	24	74	9	56	47	0	1	50	1.12
123302--123332	2	16.0	2	93	6	55	51	0	0	48	1.00
123455--123480	2	13.0	2	100	0	52	50	0	0	50	1.00
123557--123584	5	5.6	5	100	0	56	21	60	0	17	1.36
123777--123805	2	14.5	2	100	0	58	0	48	0	51	1.00
124445--124480	5	7.2	5	90	0	54	55	0	22	22	1.44
129601--129650	16	2.7	19	74	25	54	60	0	4	36	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131795--131824	3	10.0	3	100	0	60	66	0	0	33	0.92
133115--133139	2	12.5	2	100	0	50	52	0	0	48	1.00
137128--137192	32	2.0	33	82	14	82	55	0	1	43	1.09
137976--138031	23	2.4	24	81	3	60	39	10	0	50	1.37
138624--138864	50	4.9	50	93	1	405	29	18	21	29	1.97
143259--143515	50	5.1	50	89	4	376	31	18	20	29	1.97
143259--143515	100	2.6	100	94	1	435	31	18	20	29	1.97
145919--145968	23	2.1	24	96	3	93	32	14	6	48	1.67
146905--146933	13	2.2	13	100	0	58	31	6	13	48	1.69
147137--147170	2	17.0	2	100	0	68	0	0	50	50	1.00
151880--151910	16	2.0	15	93	6	53	29	0	0	70	0.87
162949--162983	3	11.7	3	88	11	54	34	0	0	65	0.93
163942--163999	16	3.6	16	85	0	71	31	3	13	51	1.58
164391--164453	27	2.3	28	78	13	69	52	4	3	39	1.38
167582--167617	18	2.0	18	88	0	54	22	22	11	44	1.84
173495--173522	1	28.0	1	100	0	56	0	100	0	0	0.00
175746--175770	2	12.5	2	100	0	50	0	48	0	52	1.00
175943--175980	2	19.0	2	100	0	76	50	0	0	50	1.00
180373--180403	15	2.1	15	93	0	53	64	0	0	35	0.94
180411--180448	16	2.3	17	81	9	51	50	5	0	44	1.24
181386--181423	2	19.0	2	100	0	76	50	0	50	0	1.00
182575--182612	18	2.2	18	85	4	51	68	2	0	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188013--188046	2	17.0	2	100	0	68	50	0	0	50	1.00
189211--189237	12	2.2	12	100	0	54	77	0	22	0	0.76
193860--193959	33	3.0	33	81	13	116	37	0	1	62	1.02
193896--193959	22	2.7	26	67	20	66	32	0	0	67	0.91
193866--193975	34	3.2	34	81	14	120	33	0	1	63	1.11
193866--193992	34	3.7	35	81	17	108	32	0	3	63	1.15
194083--194128	24	2.0	23	82	4	56	32	4	2	60	1.28
194597--194662	12	5.3	13	71	23	61	31	0	1	66	1.01
194597--194728	12	11.0	12	67	20	55	30	0	5	64	1.16
195030--195099	13	5.2	13	70	16	52	40	0	0	60	0.97
196518--196547	6	5.0	6	100	0	60	33	66	0	0	0.92
199215--199250	2	18.0	2	94	0	63	0	50	2	47	1.15
199250--199274	2	12.5	2	100	0	50	48	0	0	52	1.00
199274--199304	2	15.5	2	100	0	62	0	0	48	51	1.00
199306--199330	12	2.1	12	100	0	50	24	0	16	60	1.36
203779--203928	77	1.9	77	93	0	255	30	15	34	20	1.94
210333--210388	3	19.0	3	92	3	78	67	5	0	26	1.11
210317--210366	23	2.2	23	88	0	73	70	14	0	16	1.18
210948--210981	2	17.0	2	93	0	59	47	0	2	50	1.16
212801--212838	2	19.0	2	100	0	76	50	0	0	50	1.00
219326--219389	28	2.4	26	82	12	85	59	0	0	40	0.97
219375--219422	18	2.8	17	82	17	55	60	2	2	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220624--220656	2	16.5	2	93	0	57	51	0	0	48	1.00
222612--222684	28	2.6	28	82	6	94	52	0	2	45	1.15
222670--222715	16	2.9	17	84	12	62	47	0	2	50	1.13
222674--222729	15	3.7	15	83	7	60	46	0	1	51	1.11
222695--222737	15	3.1	14	87	9	54	44	0	0	55	0.99
225370--225405	2	18.0	2	94	0	63	47	0	2	50	1.15
227427--228129	154	4.5	155	79	9	712	29	20	23	26	1.99
239807--239833	2	13.5	2	100	0	54	48	0	0	51	1.00
243103--243128	6	4.3	6	100	0	52	0	0	15	84	0.62
249832--249912	29	2.9	28	77	12	85	39	0	3	56	1.17

Tables:   1   2   3