genome.fa.s303.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold303
Parameters: 2 7 7 80 10 50 1000
Length:  874694

Tables:   1   2   3   

This is table  3  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601873--601914	10	4.2	10	85	8	59	45	0	0	54	0.99
605053--605175	63	2.0	63	96	0	228	39	25	8	26	1.85
615163--615214	2	26.0	2	100	0	104	50	0	50	0	1.00
616797--617106	155	2.0	155	98	1	606	25	12	18	43	1.85
619265--619306	2	21.0	2	100	0	84	50	0	0	50	1.00
622103--622131	2	14.5	2	100	0	58	48	0	0	51	1.00
622499--622547	17	2.9	17	77	22	50	53	0	4	42	1.20
625092--625339	136	1.8	136	88	0	381	24	22	19	33	1.97
627215--627248	2	17.0	2	100	0	68	50	0	0	50	1.00
627530--627563	3	11.7	3	87	6	52	32	2	0	64	1.08
627527--627563	17	2.2	16	90	4	56	32	2	0	64	1.07
628164--628224	29	2.0	31	84	9	81	42	0	0	57	0.98
628175--628217	21	2.0	21	82	8	52	39	0	0	60	0.97
641245--641269	2	12.5	2	100	0	50	48	0	0	52	1.00
641552--641585	2	17.0	2	87	0	50	47	0	2	50	1.16
644869--644923	28	2.0	28	100	0	110	32	3	10	52	1.54
647093--647145	27	2.0	27	85	7	72	43	5	0	50	1.25
647299--647328	15	2.1	15	93	6	53	36	43	6	13	1.70
647377--647401	2	12.5	2	100	0	50	48	0	0	52	1.00
647547--647591	21	2.1	22	84	12	58	31	0	4	64	1.13
647834--647878	22	2.1	21	84	12	56	48	4	2	44	1.35
647849--647902	22	2.4	23	80	14	60	44	5	3	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648443--648492	3	16.0	3	83	8	64	64	0	6	30	1.18
648619--648649	2	15.5	2	100	0	62	0	48	0	51	1.00
649928--649953	2	13.0	2	100	0	52	50	0	0	50	1.00
652596--652633	2	19.0	2	94	0	67	47	0	0	52	1.00
656443--656505	30	2.2	29	77	11	67	60	0	1	38	1.07
657000--657027	2	14.0	2	100	0	56	50	0	0	50	1.00
659034--659071	6	6.7	6	93	6	53	0	7	2	89	0.57
659034--659071	11	3.4	11	89	10	51	0	7	2	89	0.57
659705--659741	16	2.2	18	85	9	51	21	5	2	70	1.20
666718--666765	16	3.1	15	82	8	60	58	0	0	41	0.98
666701--666756	26	2.1	28	83	6	71	58	0	0	41	0.98
666701--666765	15	4.5	15	70	14	57	60	0	0	40	0.97
666875--666993	60	2.0	60	80	12	138	42	0	2	54	1.13
666878--666964	32	2.6	33	80	10	97	41	0	2	56	1.12
666965--667025	27	2.2	27	82	5	77	40	0	1	57	1.08
666951--667029	17	4.4	18	70	20	51	39	0	1	59	1.06
675911--675966	25	2.3	24	79	11	62	46	0	0	53	1.00
675937--676038	20	5.0	20	67	22	61	49	0	0	50	1.00
677295--677379	42	2.0	42	93	0	143	28	17	12	41	1.87
682186--682223	4	9.5	4	100	0	76	23	0	0	76	0.79
683484--683527	6	7.3	6	94	0	70	31	63	0	4	1.14
685597--685651	15	3.7	15	85	0	65	32	10	40	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685603--685651	9	5.4	9	80	0	53	32	12	38	16	1.86
685621--685649	12	2.4	12	100	0	58	34	13	34	17	1.89
685656--685695	18	2.2	18	90	0	62	45	0	55	0	0.99
703467--703508	18	2.3	19	80	8	52	52	4	0	42	1.22
704162--704195	2	17.0	2	100	0	68	0	50	0	50	1.00
715450--715479	3	10.0	3	92	0	51	33	0	3	63	1.11
716516--716554	2	19.5	2	100	0	78	48	0	0	51	1.00
719482--719542	27	2.2	29	82	11	74	34	0	1	63	1.04
720432--720461	2	15.0	2	100	0	60	50	0	0	50	1.00
726785--726815	16	1.9	16	93	0	53	41	0	6	51	1.27
727089--727143	27	1.9	27	85	10	74	38	1	1	58	1.20
727120--727218	19	5.6	17	70	20	71	41	1	2	55	1.18
727088--727218	27	4.5	28	69	21	65	40	1	2	55	1.22
727164--727238	19	4.0	19	73	20	52	38	2	0	58	1.12
727410--727461	25	2.1	25	96	0	95	44	1	0	53	1.11
729958--730000	13	3.4	13	83	6	61	58	2	0	39	1.11
731623--731663	21	1.9	21	85	5	55	56	0	0	43	0.99
745601--745634	2	17.0	2	93	0	59	50	2	0	47	1.16
746881--746924	13	3.5	13	84	9	56	54	0	0	45	0.99
748156--748241	25	3.3	26	74	12	79	60	0	2	37	1.10
752783--752892	30	3.8	27	76	22	91	42	0	0	57	0.98
752780--752871	47	1.9	49	82	8	118	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752802--752871	16	4.3	17	77	22	71	44	0	0	55	0.99
752778--752906	30	4.5	27	73	21	86	40	0	0	58	1.03
758265--758328	32	2.0	32	93	3	112	18	17	29	34	1.94
761606--761649	23	2.0	23	82	13	56	47	4	0	47	1.22
763042--763073	2	16.0	2	100	0	64	50	0	0	50	1.00
763071--763097	4	6.8	4	100	0	54	25	0	22	51	1.48
763388--763488	46	2.3	44	81	11	109	48	0	8	42	1.34
769804--769837	4	8.5	4	100	0	68	26	26	47	0	1.53
770405--770483	42	1.9	41	82	7	97	48	2	0	49	1.14
771060--771122	33	1.9	32	87	9	92	53	0	0	46	1.00
775925--775950	2	13.0	2	100	0	52	50	0	50	0	1.00
776704--776747	15	2.9	15	86	0	52	45	0	0	54	0.99
782704--782747	2	22.5	2	95	4	81	50	0	0	50	1.00
783175--783212	17	2.2	17	95	0	67	60	2	5	31	1.33
784497--784556	17	3.7	16	76	8	50	65	0	1	33	1.03
786903--786927	2	12.5	2	100	0	50	52	0	0	48	1.00
788862--788891	15	2.0	15	100	0	60	20	33	6	40	1.78
789100--789131	13	2.4	14	94	5	57	59	0	0	40	0.97
801422--801487	32	2.3	31	82	15	79	43	3	4	48	1.38
805515--805540	11	2.4	11	100	0	52	15	7	7	69	1.35
807317--807400	23	3.6	23	80	15	93	65	0	4	29	1.13
807323--807400	15	5.3	14	71	18	61	67	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811234--811266	16	2.1	16	94	0	57	45	0	0	54	0.99
812011--812054	3	14.7	3	100	0	88	65	0	0	34	0.93
814441--814536	5	19.6	5	69	21	53	62	1	1	35	1.09
815537--815578	8	5.5	8	80	8	52	40	0	0	59	0.97
815538--815578	15	2.9	14	86	10	57	39	0	0	60	0.96
815545--815606	21	2.9	20	79	13	54	38	1	0	59	1.07
818695--818747	17	2.9	19	81	18	69	52	1	0	45	1.11
818695--818747	20	3.0	19	76	23	62	52	1	0	45	1.11
820138--820163	4	6.5	4	100	0	52	26	0	23	50	1.50
824210--824246	2	18.5	2	100	0	74	48	0	0	51	1.00
825980--826018	2	19.5	2	94	0	69	48	0	2	48	1.15
826018--826043	2	13.0	2	100	0	52	50	0	50	0	1.00
836858--836896	2	19.5	2	100	0	78	51	0	0	48	1.00
837524--837552	13	2.1	14	93	6	51	41	0	0	58	0.98
838155--838208	20	2.7	20	77	11	58	57	0	0	42	0.98
838947--839013	24	2.8	25	77	13	77	50	0	0	49	1.00
843823--843858	2	18.5	2	88	5	56	52	0	0	47	1.00
852378--852403	3	8.7	3	100	0	52	65	0	34	0	0.93
852419--852443	2	12.5	2	100	0	50	52	0	48	0	1.00
853055--853098	3	14.7	3	95	0	79	31	2	0	65	1.05
861504--861543	19	2.2	18	86	4	53	42	0	0	57	0.98
874306--874337	2	16.5	2	93	6	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
874303--874335	15	2.2	15	100	0	66	54	0	0	45	0.99

Tables:   1   2   3

The End!