genome.fa.s303.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold303
Parameters: 2 7 7 80 10 50 1000
Length:  874694

Tables:   1   2   3   

This is table  2  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249894--249927	14	2.4	14	86	13	52	26	2	0	70	1.01
251356--251415	22	2.7	21	80	10	75	66	0	3	30	1.07
253446--253485	2	20.0	2	100	0	80	50	0	0	50	1.00
268678--268743	6	11.0	6	98	0	87	42	0	7	50	1.31
269102--269135	2	17.0	2	100	0	68	50	0	0	50	1.00
276737--276767	3	10.3	3	100	0	62	67	0	0	32	0.91
277518--277606	43	2.1	43	89	0	133	29	24	12	33	1.92
286646--286685	2	20.0	2	100	0	80	50	0	0	50	1.00
287928--287977	2	25.0	2	100	0	100	0	50	0	50	1.00
289973--290006	17	2.0	17	88	0	50	0	14	2	82	0.79
294190--294215	2	13.0	2	100	0	52	50	0	50	0	1.00
297380--297432	2	26.5	2	96	0	97	0	49	0	50	1.00
298263--298897	314	2.0	319	93	2	1093	33	15	24	26	1.96
301010--301039	2	15.0	2	92	0	51	46	0	3	50	1.18
301308--301369	4	15.5	4	93	0	70	50	9	0	40	1.35
301309--301367	12	4.9	12	89	0	82	50	10	0	38	1.36
303471--303529	16	3.8	16	79	2	66	42	0	0	57	0.98
303467--303537	16	4.5	16	72	10	56	43	0	0	56	0.99
304296--304320	6	4.2	6	100	0	50	16	0	0	84	0.63
304721--304768	23	2.1	23	84	7	62	50	12	0	37	1.41
305006--305039	14	2.4	14	90	0	50	67	0	5	26	1.13
315392--315436	23	1.9	23	81	4	54	77	0	17	4	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322160--322199	2	20.0	2	100	0	80	50	0	50	0	1.00
327453--327496	22	2.0	22	86	8	63	40	2	4	52	1.34
327770--327816	2	23.5	2	95	0	85	48	0	2	48	1.13
330056--330088	2	16.5	2	100	0	66	51	0	48	0	1.00
343082--343243	50	3.2	50	87	0	216	37	16	14	32	1.89
343779--343818	2	20.0	2	100	0	80	0	50	0	50	1.00
344337--344406	27	2.6	27	84	6	88	50	0	2	47	1.16
349102--349134	2	16.5	2	100	0	66	51	0	48	0	1.00
349604--349644	22	1.9	21	85	5	55	68	4	0	26	1.10
349801--349834	6	5.8	6	96	3	61	52	29	17	0	1.45
349799--349837	18	2.3	17	87	12	62	53	28	17	0	1.44
349985--350013	3	9.7	3	100	0	58	68	0	0	31	0.89
350335--350368	3	10.7	3	90	6	50	64	0	2	32	1.08
352510--352809	99	3.0	99	95	0	521	42	16	18	23	1.89
353051--353142	48	1.9	48	90	0	148	54	10	18	16	1.70
357621--357647	10	2.7	10	100	0	54	29	0	0	70	0.88
357796--357835	22	2.0	22	85	14	59	50	0	0	50	1.00
357816--357893	26	2.9	25	80	14	77	58	0	3	37	1.16
364307--364340	13	2.5	13	90	9	50	64	0	0	35	0.94
365337--365369	2	16.5	2	100	0	66	48	0	0	51	1.00
366439--366464	2	13.0	2	100	0	52	50	0	0	50	1.00
367666--367726	27	2.2	27	85	2	77	32	29	26	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371080--371108	2	14.5	2	100	0	58	51	0	0	48	1.00
376578--376604	2	13.5	2	100	0	54	48	0	0	51	1.00
379373--379424	17	3.1	16	78	13	52	38	0	3	57	1.17
379481--379534	26	2.0	28	82	7	67	22	3	12	61	1.47
381832--381893	24	3.0	19	72	20	61	30	24	4	40	1.76
384114--384139	2	13.0	2	100	0	52	50	0	0	50	1.00
392894--393008	49	2.4	47	77	9	108	34	0	1	63	1.05
392988--393035	24	2.0	23	84	11	62	37	2	0	60	1.09
393106--393162	22	2.7	21	81	10	64	61	1	0	36	1.07
393106--393156	19	2.7	20	77	17	63	60	0	0	39	0.97
393113--393162	20	2.5	19	81	9	55	64	2	0	34	1.05
395752--395824	11	6.3	11	72	20	51	52	2	4	41	1.35
400282--400321	2	20.0	2	100	0	80	50	0	0	50	1.00
408246--408276	2	15.5	2	93	0	53	45	0	3	51	1.17
409672--409701	2	15.0	2	100	0	60	0	50	0	50	1.00
410400--410530	65	2.0	65	93	0	226	24	16	17	41	1.89
421792--421846	18	2.9	19	71	17	51	32	7	9	50	1.61
438573--438607	16	2.1	18	89	10	56	77	2	0	20	0.90
438799--438832	16	2.1	16	89	10	52	64	5	0	29	1.17
440817--440843	5	5.4	5	100	0	54	81	0	0	18	0.69
441746--441775	2	15.0	2	92	0	51	0	50	3	46	1.18
454325--454354	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454495--454535	2	20.5	2	100	0	82	48	0	0	51	1.00
454702--454742	20	2.2	20	86	8	59	48	2	0	48	1.14
454710--454750	20	2.0	20	85	0	55	56	2	0	41	1.13
463884--463922	2	19.5	2	100	0	78	51	0	0	48	1.00
464097--464135	7	5.4	7	82	17	53	46	0	0	53	1.00
464097--464141	14	3.1	14	84	15	65	44	0	0	55	0.99
464836--464888	17	3.1	17	76	15	56	43	1	0	54	1.11
465025--465066	20	2.1	20	86	0	57	4	85	0	9	0.72
465513--465572	15	3.9	15	70	14	50	55	0	1	43	1.10
466139--466175	2	18.5	2	94	0	65	48	0	0	51	1.00
482884--482908	2	12.5	2	100	0	50	52	0	0	48	1.00
484635--484674	21	1.9	21	90	10	64	57	0	0	42	0.98
484659--484699	17	2.3	18	87	4	57	39	0	0	60	0.96
484972--485010	3	13.0	3	94	0	69	0	2	33	64	1.08
496534--496589	23	2.4	23	80	8	62	53	3	0	42	1.18
497803--497827	3	8.3	3	100	0	50	64	0	36	0	0.94
526442--526472	2	15.5	2	93	0	53	48	0	0	51	1.00
528617--528645	3	9.7	3	100	0	58	68	0	0	31	0.89
528843--528878	2	18.0	2	100	0	72	50	50	0	0	1.00
532314--532371	30	1.9	30	92	0	98	31	20	12	36	1.89
538622--538664	10	4.3	10	82	11	52	2	2	11	83	0.83
539421--539462	21	2.0	20	82	13	50	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539924--539969	23	2.0	23	91	0	74	63	0	2	34	1.07
539931--539974	23	1.9	23	95	0	79	61	0	0	38	0.96
540054--540087	15	2.2	16	89	5	52	44	2	0	52	1.16
540659--540720	27	2.5	24	76	18	65	40	1	3	54	1.26
540736--540788	19	2.6	21	82	8	65	58	0	1	39	1.09
540813--540837	5	5.0	5	100	0	50	60	0	0	40	0.97
541021--541061	14	2.9	14	88	0	55	56	2	0	41	1.13
541028--541062	2	17.5	2	87	0	52	54	0	0	45	0.99
547117--547168	2	26.0	2	100	0	104	0	50	0	50	1.00
548320--548351	2	16.0	2	100	0	64	50	0	0	50	1.00
550573--550621	2	24.5	2	95	0	89	48	0	2	48	1.12
553508--553577	32	2.2	32	82	14	83	55	0	0	44	0.99
557353--557399	23	2.0	23	100	0	94	42	12	4	40	1.63
557703--557752	22	2.3	23	83	10	61	42	0	0	58	0.98
557718--557781	18	3.5	17	76	20	58	31	0	0	68	0.90
557744--557781	18	2.1	18	90	9	60	23	0	0	76	0.79
557719--557777	28	2.3	25	80	13	66	30	0	0	69	0.89
557911--557980	34	2.1	34	91	0	113	37	0	7	55	1.27
558600--558652	21	2.6	19	77	11	52	66	0	0	33	0.92
558891--558920	3	10.0	3	100	0	60	66	0	0	33	0.92
559687--559733	22	2.1	22	84	7	60	31	0	0	68	0.90
559807--559855	3	16.7	3	89	4	64	65	6	0	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563646--563878	128	1.9	122	82	7	288	33	15	22	28	1.95
565138--565174	2	18.5	2	100	0	74	51	0	0	48	1.00
565340--565368	6	5.0	6	95	4	51	13	17	17	51	1.76
573738--573785	22	2.2	22	77	3	53	52	0	0	47	1.00
582855--582929	26	3.0	25	80	3	105	41	12	14	32	1.83
587310--587347	2	19.0	2	100	0	76	0	50	0	50	1.00
592410--592501	46	2.0	45	87	10	134	23	21	10	43	1.84
592502--592549	2	24.0	2	95	0	87	50	2	0	47	1.12
595152--595210	29	2.0	30	86	3	84	37	6	10	45	1.65
601876--601917	21	2.0	21	95	0	75	45	0	0	54	0.99

Tables:   1   2   3