genome.fa.s314.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold314
Parameters: 2 7 7 80 10 50 1000
Length:  443445

Tables:   1   2   3   

This is table  3  of  3  ( 338 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330840--331076	49	4.9	49	80	8	252	32	17	25	24	1.96
330813--331031	101	2.2	101	82	1	260	35	16	24	24	1.95
330936--331071	43	3.0	43	82	8	164	34	17	22	25	1.96
331080--331225	29	5.1	28	78	9	143	20	19	27	32	1.97
331093--331328	56	4.2	57	80	6	214	20	16	27	35	1.94
331079--331329	85	2.9	86	81	8	248	21	17	26	34	1.95
331093--331328	28	8.3	29	76	8	182	20	16	27	35	1.94
331679--331763	37	2.3	37	97	0	161	43	16	15	24	1.86
335905--336150	30	8.0	30	83	8	284	24	29	14	31	1.95
335896--336167	61	4.4	61	83	9	336	23	29	13	33	1.94
335896--336207	91	3.3	93	84	5	380	23	29	14	32	1.94
336123--336581	33	14.8	32	78	12	428	21	32	13	33	1.92
336149--336580	60	7.1	60	81	9	471	20	32	13	33	1.92
336149--336581	93	4.7	91	82	9	513	20	32	13	33	1.91
336554--336649	30	3.3	29	84	7	124	34	32	16	16	1.92
336573--336659	28	2.9	30	80	16	101	33	29	17	19	1.95
336676--336826	39	3.8	39	81	5	187	27	27	19	26	1.99
336669--336879	79	2.5	84	87	9	297	26	26	19	27	1.99
336794--337305	52	10.6	51	75	13	360	25	26	18	29	1.98
336746--337016	140	2.0	136	91	2	443	26	26	18	28	1.98
336890--337054	39	4.0	39	77	16	179	28	26	20	25	1.99
336841--337106	87	3.0	87	90	3	390	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336929--337256	48	6.8	48	76	12	273	25	26	18	29	1.98
336669--337152	227	2.2	218	89	4	709	26	26	19	28	1.99
336933--337305	139	2.6	144	83	8	427	24	26	18	30	1.98
337027--337256	97	2.3	104	82	6	294	23	26	19	30	1.98
338092--338146	20	2.8	20	88	5	76	32	16	12	38	1.86
353523--353548	13	2.0	13	100	0	52	38	15	15	30	1.88
356632--356668	16	2.2	17	90	9	58	24	0	0	75	0.80
357254--357281	13	2.2	13	100	0	56	28	14	17	39	1.89
357267--357415	52	2.9	50	86	6	199	32	17	16	32	1.93
367545--367605	13	5.2	13	70	22	53	40	13	13	32	1.82
367527--367625	33	3.0	33	88	2	119	41	11	14	33	1.81
367559--367627	20	3.8	20	71	25	71	40	8	13	37	1.75
369583--369793	80	2.7	78	80	3	251	35	13	25	26	1.92
369757--369848	28	3.3	28	92	0	148	33	19	21	25	1.97
369807--370278	79	6.0	79	78	9	405	36	12	21	28	1.91
369593--370003	213	1.9	215	83	3	526	34	13	23	28	1.93
369806--370253	237	1.9	236	81	5	539	35	13	22	28	1.92
369803--370279	158	3.0	153	76	9	469	36	12	21	28	1.91
372639--372714	20	3.7	20	92	3	116	43	10	17	28	1.82
372680--372737	20	2.8	20	89	5	80	34	12	12	41	1.79
372639--372734	42	2.3	40	83	3	111	40	11	15	32	1.83
374738--374780	20	2.2	19	84	12	52	60	18	0	20	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375278--375319	19	2.1	21	86	8	61	66	16	0	16	1.25
375757--375782	13	2.0	13	100	0	52	38	15	15	30	1.88
377135--377173	20	1.9	20	84	5	51	48	0	5	46	1.24
380701--380740	2	20.5	2	94	5	73	50	0	0	50	1.00
381401--381427	13	2.1	13	100	0	54	29	14	14	40	1.86
381384--381446	32	1.9	33	87	9	94	28	15	14	41	1.87
381477--381541	33	2.0	32	88	11	96	32	15	18	33	1.92
381497--381521	13	1.9	13	100	0	50	36	16	16	32	1.90
382743--382778	2	18.0	2	100	0	72	50	0	0	50	1.00
386806--386831	13	2.0	13	100	0	52	30	15	15	38	1.88
386786--386852	33	2.0	33	88	0	98	25	14	16	43	1.86
389200--389533	52	6.3	53	70	14	210	29	25	12	32	1.92
389517--389592	28	2.7	28	85	0	89	25	34	17	23	1.96
389195--389600	212	1.9	212	88	3	611	28	26	13	31	1.94
389255--389667	107	3.9	107	72	10	270	28	26	14	30	1.95
389547--389781	79	3.0	80	77	4	190	26	28	13	31	1.94
394703--394740	14	2.7	14	95	0	67	68	0	18	13	1.21
394904--395039	50	2.7	50	89	4	211	29	22	16	31	1.96
395113--395169	23	2.5	23	83	8	64	57	10	3	28	1.48
398764--398796	2	16.5	2	100	0	66	51	0	0	48	1.00
399300--399326	4	6.8	4	100	0	54	48	0	0	51	1.00
400689--400753	26	2.4	27	78	16	73	52	0	6	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401017--401062	16	2.9	16	83	0	65	15	15	28	41	1.87
403703--403741	6	6.5	6	96	0	69	33	20	33	12	1.91
403884--403908	2	12.5	2	100	0	50	48	0	52	0	1.00
405261--405313	3	17.7	3	100	0	106	32	0	0	67	0.91
408180--408216	2	18.5	2	94	0	65	0	48	0	51	1.00
408794--408837	3	14.0	3	85	4	52	68	0	2	29	1.02
408801--408840	20	2.0	20	90	0	62	70	0	2	27	1.01
408832--408892	14	4.4	14	72	14	54	59	1	1	37	1.17
409411--409457	9	5.3	9	75	14	53	74	0	0	25	0.82
409402--409465	8	7.6	8	77	19	60	71	0	0	28	0.86
409462--409502	19	2.3	18	88	12	59	56	0	0	43	0.99
414399--414553	68	2.3	68	91	0	256	36	1	28	32	1.68
415262--415418	20	7.8	20	70	23	107	28	16	14	41	1.87
415300--415329	13	2.3	13	94	0	51	33	16	10	40	1.82
417737--417880	51	2.8	51	81	10	170	30	18	11	38	1.87
418005--418120	51	2.3	52	82	14	152	33	23	9	33	1.87
417977--418218	131	1.9	130	81	7	303	29	24	12	33	1.92
419371--419462	46	2.0	46	100	0	184	39	19	10	30	1.86
420802--420826	13	1.9	13	100	0	50	32	16	16	36	1.90
421517--421603	44	2.0	44	95	0	156	40	13	2	43	1.57
423687--423753	33	2.0	33	88	0	98	34	11	13	40	1.81
423707--423731	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423794--423818	13	1.9	13	100	0	50	32	16	16	36	1.90
423827--423956	52	2.5	52	91	3	201	33	19	16	31	1.94
426921--427724	400	2.0	400	99	0	1590	38	20	13	27	1.90
433633--433695	33	1.9	33	90	0	99	34	17	12	34	1.88
433725--433780	20	2.9	19	89	2	76	39	16	14	30	1.88
433729--433780	19	2.7	20	87	3	70	40	15	13	30	1.86
434473--434537	33	2.0	33	87	0	94	32	15	15	36	1.89
434493--434517	13	1.9	13	100	0	50	32	16	16	36	1.90
440874--440918	21	2.1	21	88	8	65	42	2	4	51	1.34
442173--442207	14	2.4	14	90	9	52	0	5	5	88	0.63

Tables:   1   2   3

The End!