genome.fa.s318.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold318
Parameters: 2 7 7 80 10 50 1000
Length:  411206

Tables:   1   2   3   

This is table  3  of  3  ( 341 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319731--319755	13	1.9	13	100	0	50	36	16	16	32	1.90
319817--319841	13	1.9	13	100	0	50	32	16	16	36	1.90
323291--323328	19	2.1	18	90	5	58	84	2	13	0	0.73
327097--327170	24	3.1	24	86	0	94	43	10	21	24	1.84
331889--331947	20	2.9	20	94	2	100	20	15	20	44	1.87
332266--332399	67	2.0	67	92	2	225	59	8	9	21	1.56
333560--333820	56	4.7	55	72	8	179	40	12	21	24	1.88
333904--334123	105	2.1	104	85	2	298	34	15	21	29	1.93
333948--334123	54	3.3	53	73	9	171	33	15	21	28	1.95
339487--339634	32	4.7	32	83	5	149	27	18	25	29	1.98
339572--340629	28	37.1	28	81	6	1026	22	18	29	30	1.97
340558--340647	27	3.3	27	87	1	72	26	18	24	30	1.98
340654--341155	27	18.4	27	86	1	554	31	13	30	24	1.93
340654--341155	136	3.7	136	84	2	625	31	13	30	24	1.93
340654--341155	163	3.1	163	86	2	632	31	13	30	24	1.93
341123--341226	33	3.1	33	76	14	104	39	11	25	24	1.88
341138--341226	34	2.6	34	87	7	128	38	11	24	25	1.89
345466--345670	79	2.6	80	79	5	193	37	12	23	26	1.91
345606--345772	51	3.3	51	86	1	237	29	11	29	29	1.92
345709--346038	79	4.2	78	84	3	376	32	14	24	28	1.94
345708--346038	158	2.1	157	84	1	430	32	14	24	28	1.94
345917--346146	107	2.1	107	85	0	298	30	15	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345995--346063	28	2.5	27	90	6	111	30	18	27	23	1.98
345837--346206	186	2.0	186	85	3	503	31	15	25	27	1.95
346025--346206	79	2.3	79	80	3	215	31	14	25	28	1.95
348559--348694	50	2.7	50	89	2	202	42	16	16	23	1.88
354363--354519	79	2.0	79	83	5	201	36	12	22	28	1.91
354454--354570	51	2.3	51	81	7	139	35	11	23	29	1.89
354503--354727	79	2.8	81	80	6	271	36	10	24	29	1.89
354374--354646	130	2.1	129	81	3	323	36	10	23	29	1.89
354662--354781	52	2.3	52	91	0	204	33	11	26	28	1.91
354383--354891	211	2.4	208	79	5	524	36	11	23	28	1.90
354737--354895	79	2.0	79	85	2	212	35	13	26	25	1.92
358061--358174	60	1.9	60	83	7	151	39	14	15	29	1.88
358061--358225	20	7.7	20	75	14	132	41	13	16	28	1.87
363068--363912	28	30.5	28	81	6	461	27	16	29	26	1.96
363366--363995	27	22.9	27	82	4	627	29	15	29	26	1.96
363167--363995	82	10.0	83	82	6	648	27	15	29	26	1.96
363366--363995	55	11.5	55	81	5	639	29	15	29	26	1.96
371100--371160	19	3.3	18	86	8	88	86	13	0	0	0.56
371100--371172	33	2.2	33	95	0	128	84	13	1	0	0.68
371122--371171	11	4.7	10	80	9	55	84	14	2	0	0.72
371102--371162	20	3.1	19	84	15	79	85	14	0	0	0.60
371100--371160	1	61.0	1	73	0	50	86	13	0	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371409--371442	12	2.8	12	95	0	59	91	5	2	0	0.51
371410--371448	13	3.1	13	88	3	53	89	2	7	0	0.56
372378--372663	30	9.2	30	84	10	344	24	28	15	31	1.95
372386--372656	62	4.4	62	92	1	411	25	28	16	30	1.96
372417--373706	33	38.9	33	84	4	1232	21	32	12	33	1.91
372424--373706	166	7.7	167	85	6	1374	21	32	12	33	1.91
373780--374555	49	15.8	49	84	6	916	25	25	17	31	1.97
373788--374501	189	3.7	189	87	5	947	24	25	17	31	1.97
374406--374544	52	2.6	52	82	4	161	25	25	15	33	1.95
375372--375438	33	2.0	33	88	0	98	34	11	13	40	1.81
375392--375416	13	1.9	13	100	0	50	36	16	16	32	1.90
375479--375503	13	1.9	13	100	0	50	32	16	16	36	1.90
375512--375639	52	2.5	52	94	3	224	33	17	17	30	1.94
382491--382520	13	2.3	13	94	0	51	33	16	10	40	1.82
382536--382643	20	5.8	19	74	18	93	27	16	13	41	1.87
382573--382603	13	2.4	13	88	0	53	29	12	16	41	1.85
384945--385109	51	3.3	50	82	5	172	29	24	12	33	1.92
385065--385365	155	1.9	157	83	7	389	28	21	14	35	1.93
385046--385374	79	4.2	78	82	5	362	27	23	14	34	1.94
385237--385520	145	2.0	146	85	3	394	27	25	14	32	1.95
397896--397994	1	99.0	1	73	0	81	86	9	3	1	0.71
397896--397981	8	10.8	8	82	9	97	87	10	1	1	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397895--397982	15	5.7	15	80	11	97	86	11	1	1	0.69
397896--397993	25	4.2	24	83	11	98	86	9	3	1	0.72
397896--397994	27	3.8	24	77	19	92	86	9	3	1	0.71
398996--399450	55	8.0	55	83	8	464	28	25	19	27	1.98
399042--399126	27	3.1	27	63	9	64	31	25	18	23	1.97
399061--399138	28	2.8	28	67	9	70	26	24	20	28	1.99
398965--399450	116	4.2	112	82	9	507	27	25	18	27	1.98
398996--399453	176	2.7	170	85	5	586	27	25	19	27	1.99
399479--399839	55	6.3	55	82	11	393	27	24	20	26	1.99
399494--399850	61	6.1	60	84	8	425	26	24	19	29	1.98
399494--399850	116	3.0	114	80	11	400	26	24	19	29	1.98
399494--399836	176	1.9	176	89	2	537	27	24	19	27	1.99
399100--400104	386	2.6	387	91	2	1555	27	25	19	27	1.99
399860--400093	55	4.1	55	84	3	261	29	28	19	23	1.98
399610--401189	265	5.8	264	79	9	1514	27	27	18	25	1.98
399915--400308	210	1.9	204	86	4	556	28	28	19	23	1.98
400123--400477	55	6.3	55	84	6	435	29	28	19	22	1.98
400123--400483	115	3.2	113	85	5	480	29	28	19	22	1.98
400144--400477	170	1.9	170	87	4	490	28	28	19	23	1.98
399860--400858	379	2.6	376	86	4	1336	28	27	19	25	1.98
400502--400924	55	7.4	55	82	6	441	28	26	19	25	1.99
400523--400918	176	2.3	171	85	3	508	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400125--401254	441	2.6	439	88	2	1660	28	27	18	25	1.98
400943--401255	55	5.5	55	78	7	293	29	27	18	24	1.98
400963--401253	61	5.0	58	79	9	256	28	27	18	25	1.98
401920--402034	60	1.9	60	92	3	196	26	15	13	43	1.85
401920--402034	20	5.8	20	87	10	164	26	15	13	43	1.85
404274--404442	51	3.3	51	81	6	164	29	26	13	30	1.93
404425--404865	79	5.6	79	82	6	497	27	24	14	33	1.94
404378--404865	158	3.1	155	80	7	558	28	25	13	32	1.94
406746--406832	20	4.2	20	88	8	129	40	11	19	28	1.86
406746--406832	43	2.1	40	89	6	129	40	11	19	28	1.86
406801--406897	51	1.9	51	95	0	176	46	11	15	26	1.80
407388--407570	80	2.3	80	78	4	192	40	10	19	28	1.85
410280--410320	21	1.9	22	90	5	66	17	21	24	36	1.94

Tables:   1   2   3

The End!