genome.fa.s321.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold321
Parameters: 2 7 7 80 10 50 1000
Length:  1060354

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 625 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645184--645234	17	2.9	17	79	5	57	33	0	0	66	0.92
645670--645698	13	2.1	14	93	6	51	44	13	6	34	1.71
645792--645826	17	2.0	17	88	5	52	45	0	0	54	0.99
646902--646930	13	2.2	13	100	0	58	41	0	0	58	0.98
646903--646939	17	2.1	19	90	10	60	40	0	0	59	0.97
646959--646989	14	2.3	14	94	5	55	51	0	0	48	1.00
650351--650377	2	13.5	2	100	0	54	51	0	0	48	1.00
654094--654135	8	5.4	8	88	8	52	33	0	0	66	0.92
654094--654135	17	2.5	17	88	3	59	33	0	0	66	0.92
654091--654135	22	2.1	21	87	4	63	33	0	0	66	0.92
654100--654141	22	1.9	22	85	0	57	35	2	0	61	1.09
654155--654209	24	2.3	23	81	6	65	29	0	1	69	0.99
654080--654199	64	1.9	64	83	10	156	37	1	0	60	1.13
655423--655461	20	2.0	20	90	10	62	53	0	2	43	1.14
658084--658129	2	24.0	2	82	8	51	54	0	2	43	1.12
672076--672110	2	18.0	2	88	5	54	51	0	0	48	1.00
673826--673879	12	4.5	12	73	21	51	62	1	0	35	1.06
673795--673854	31	2.0	30	90	9	95	61	0	0	38	0.96
673834--673881	22	2.1	24	84	7	64	66	2	0	31	1.03
676644--676694	17	2.9	18	80	11	52	35	0	3	60	1.15
676970--677016	13	3.4	13	83	16	67	61	0	0	38	0.96
676960--677022	29	2.1	30	88	2	92	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677276--677307	13	2.4	14	94	5	57	46	0	0	53	1.00
677541--677626	38	2.3	39	82	8	106	50	3	5	40	1.44
677803--677842	17	2.4	17	84	12	55	57	2	2	37	1.26
682236--682315	35	2.2	35	84	8	106	57	0	0	42	0.98
682286--682326	12	3.3	12	93	6	73	46	0	0	53	1.00
682285--682329	13	3.5	13	87	6	74	46	0	0	53	1.00
683070--683121	25	2.1	25	96	0	95	42	3	17	36	1.67
684078--684107	2	15.0	2	100	0	60	50	0	0	50	1.00
688292--688320	10	3.0	10	95	5	51	31	0	0	68	0.89
689383--689444	33	1.9	33	87	9	92	64	0	0	35	0.94
689383--689444	32	1.9	32	87	9	90	64	0	0	35	0.94
689410--689511	37	2.6	37	73	15	91	56	0	0	41	1.12
689423--689488	27	2.4	28	84	5	80	54	0	1	43	1.09
689454--689510	19	2.8	20	78	7	62	56	1	0	42	1.10
693494--693532	18	2.1	19	90	4	62	56	0	0	43	0.99
693517--693563	24	2.0	24	91	8	78	42	0	0	57	0.98
694063--694113	22	2.2	23	80	16	61	39	3	0	56	1.18
694087--694123	19	2.0	19	89	5	58	40	2	0	56	1.13
697088--697122	18	1.9	18	94	0	61	62	2	0	34	1.10
697834--697893	18	3.3	18	73	21	54	45	0	0	55	0.99
697957--697987	2	15.5	2	100	0	62	51	0	48	0	1.00
700442--700494	6	9.0	6	80	12	65	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700432--700494	20	3.4	18	84	10	74	65	0	0	34	0.93
701416--701440	3	8.3	3	100	0	50	32	0	0	68	0.90
701783--701813	6	5.2	6	96	0	53	12	16	51	19	1.76
714993--715083	1	91.0	1	77	0	74	86	5	7	0	0.69
715013--715071	17	3.5	17	81	9	84	86	3	10	0	0.68
714999--715083	34	2.6	34	96	3	156	87	5	7	0	0.68
717851--717878	2	14.0	2	100	0	56	50	0	0	50	1.00
718941--718991	17	3.0	17	75	16	52	52	0	0	47	1.00
718955--719001	17	2.6	18	77	16	53	46	0	0	53	1.00
721514--721601	21	4.2	21	67	25	62	70	2	1	26	1.06
723128--723167	19	2.1	19	85	0	53	60	5	0	35	1.19
724065--724136	35	2.1	35	100	0	144	38	11	22	27	1.88
725292--725426	56	2.5	53	80	13	125	59	0	0	40	0.98
725282--725426	54	2.7	52	78	14	125	59	0	0	40	0.97
728819--728958	36	3.7	36	70	15	104	60	0	0	39	0.97
728831--728953	20	6.5	20	71	21	79	60	0	0	39	0.97
728819--728961	20	7.4	19	68	23	70	60	0	0	39	0.97
729450--729485	18	2.0	18	94	0	63	30	0	2	66	1.06
733250--733334	35	2.4	35	82	5	109	57	0	1	41	1.06
733250--733334	36	2.4	34	81	9	100	57	0	1	41	1.06
733639--733677	19	2.1	19	90	4	62	30	0	2	66	1.05
733653--733743	34	2.9	31	79	11	96	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733643--733690	18	2.4	20	80	16	55	35	0	2	62	1.07
733653--733723	29	2.3	29	85	9	88	42	0	0	57	0.98
735208--735234	3	9.0	3	100	0	54	0	0	66	33	0.92
735245--735318	21	3.5	21	87	3	87	20	1	56	21	1.49
735335--735389	27	2.0	27	82	0	65	12	3	56	27	1.53
735741--735861	45	2.8	42	81	8	127	15	2	58	23	1.49
735773--735882	21	5.2	21	74	4	96	15	2	60	20	1.47
735808--735842	6	5.8	6	93	0	61	14	0	65	20	1.26
735765--735884	63	1.9	63	86	3	170	15	2	60	20	1.46
735725--735861	24	6.1	24	71	14	87	17	2	56	22	1.54
736157--736257	42	2.4	42	83	3	123	6	7	43	41	1.61
748795--748839	2	22.5	2	90	0	72	51	4	0	44	1.21
754150--754199	23	2.1	25	85	7	68	68	2	0	30	1.01
754148--754206	29	2.1	27	84	12	75	66	1	0	32	1.02
754161--754204	22	2.0	22	82	8	54	70	2	0	27	0.99
754756--754806	21	2.4	22	83	12	70	54	1	0	43	1.11
761166--761195	2	15.0	2	100	0	60	50	0	0	50	1.00
766844--766871	2	14.0	2	100	0	56	50	0	0	50	1.00
767806--767846	14	2.7	15	88	7	57	48	0	2	48	1.14
770400--770458	24	2.4	25	80	8	68	59	3	0	37	1.14
772469--772494	13	2.0	13	100	0	52	23	30	7	38	1.83
772801--772949	34	4.4	34	85	5	203	41	25	8	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772797--772949	67	2.3	68	89	4	238	41	26	8	23	1.83
774699--774763	32	2.0	32	96	0	121	24	16	21	36	1.94
776211--776248	18	2.1	18	90	5	58	21	23	0	55	1.44
777419--777565	34	4.3	34	80	4	161	44	18	6	31	1.74
780804--780832	14	2.1	14	100	0	58	6	13	13	65	1.45
780900--780951	14	3.9	12	75	22	50	53	0	0	46	1.00
780909--780946	20	1.9	20	94	0	67	52	0	0	47	1.00
780900--780958	27	2.2	28	82	11	70	50	0	0	49	1.00
781325--781426	52	2.0	52	100	0	204	23	15	17	43	1.88
785354--785394	5	8.2	5	89	10	66	0	17	2	80	0.82
789316--789356	21	2.0	21	90	0	64	19	0	7	73	1.07
789582--789615	2	17.0	2	100	0	68	50	0	0	50	1.00
791023--791059	3	12.3	3	100	0	74	67	0	0	32	0.91
793946--794174	121	1.9	121	84	0	305	40	14	15	30	1.87
797329--797407	36	2.2	36	83	0	95	22	29	20	27	1.98
797339--797410	36	2.0	36	86	0	99	20	30	20	27	1.98
802452--802476	12	2.1	12	100	0	50	92	0	8	0	0.40
808398--808447	23	2.1	23	81	3	55	56	6	24	14	1.60
812660--812689	2	15.0	2	100	0	60	50	0	0	50	1.00
813092--813124	2	16.5	2	100	0	66	0	48	0	51	1.00
814378--814407	3	9.7	3	92	7	51	66	0	0	33	0.92
814610--814685	27	2.9	27	74	16	77	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821617--821665	9	5.2	10	76	14	50	65	0	0	34	0.93
822374--822405	2	16.0	2	100	0	64	50	0	50	0	1.00
823322--823380	29	2.1	29	78	9	68	55	1	0	42	1.09
831988--832053	22	2.9	23	78	15	75	48	0	1	50	1.10
832033--832078	14	3.4	14	87	3	67	50	0	0	50	1.00
833202--833253	24	2.2	24	89	6	79	46	1	1	50	1.23
833319--833384	34	1.9	34	84	0	87	40	6	9	43	1.61
834049--834081	2	17.5	2	87	12	52	0	48	0	51	1.00
838675--838718	2	22.0	2	100	0	88	50	0	50	0	1.00
841683--841768	42	2.1	42	91	2	138	53	0	12	33	1.39

Tables:   1   2   3   4   5   6