genome.fa.s327.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold327
Parameters: 2 7 7 80 10 50 1000
Length:  596179

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 484 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139674--139708	6	5.8	6	100	0	70	82	0	0	17	0.66
149290--149361	24	3.0	24	93	0	117	43	18	16	22	1.88
149925--150022	30	3.2	32	69	16	91	41	0	0	58	0.98
149946--150034	24	3.7	24	71	16	67	39	0	0	60	0.97
149908--150019	11	9.6	12	69	16	58	43	0	0	56	0.99
153264--153344	40	2.0	40	81	11	96	6	14	8	70	1.32
153290--153344	14	4.1	14	81	9	60	7	14	9	69	1.36
153302--153433	69	1.9	69	81	10	162	5	18	8	67	1.36
153634--153701	29	2.3	29	82	0	82	13	17	13	55	1.68
153653--153710	29	2.0	29	93	0	98	8	18	15	56	1.64
154830--154986	42	3.7	42	74	0	161	35	20	27	16	1.94
154841--154996	84	1.9	84	87	0	231	35	18	28	17	1.94
154939--155059	61	2.0	61	88	0	179	36	14	28	19	1.92
155000--156950	42	46.4	42	72	7	956	36	17	27	18	1.93
155000--156731	84	20.6	84	76	4	1200	36	17	27	18	1.94
156154--156721	169	3.4	169	78	7	483	37	19	25	17	1.93
156964--157083	44	2.7	43	82	12	131	39	15	23	22	1.91
161567--161627	30	2.0	30	96	0	113	26	21	6	45	1.76
168048--168112	16	4.0	16	86	6	78	38	26	18	16	1.92
171831--171876	10	4.6	10	81	7	58	0	13	0	86	0.56
171832--171876	11	4.5	11	86	8	53	0	13	0	86	0.57
172298--172423	37	3.5	36	78	6	132	7	17	8	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172321--172423	34	3.0	33	78	9	116	7	17	7	66	1.40
172320--172463	70	2.1	69	81	7	166	5	19	9	65	1.40
172630--172723	29	3.2	29	84	0	125	12	21	19	46	1.82
173255--173313	8	7.5	8	83	7	68	22	0	0	77	0.76
173247--173302	14	4.2	14	82	17	59	25	1	0	73	0.93
173248--173313	25	2.7	25	82	13	77	22	1	0	75	0.88
173257--173313	15	3.7	15	84	13	71	21	0	0	78	0.74
179000--179052	13	4.3	12	79	15	56	18	0	1	79	0.83
178997--179046	16	3.3	15	81	13	66	18	0	2	80	0.82
178997--179045	24	2.0	26	88	11	77	18	0	2	79	0.83
180793--181357	138	4.1	138	94	0	1015	14	23	13	48	1.79
185254--185285	7	4.4	7	96	4	55	59	0	0	40	0.97
189094--189118	12	2.1	12	100	0	50	24	8	8	60	1.52
190760--190802	2	21.5	2	100	0	86	51	0	0	48	1.00
193074--193118	22	2.0	22	91	8	74	48	0	0	51	1.00
193106--193151	10	4.6	11	80	20	57	45	0	0	54	0.99
193103--193149	19	2.2	20	78	17	51	46	0	0	53	1.00
193109--193211	28	3.5	28	71	21	86	44	1	0	53	1.11
193182--193246	16	3.4	19	75	18	64	41	0	0	58	0.98
193073--193226	16	9.6	16	69	20	65	45	1	0	53	1.08
193799--193835	14	2.7	13	88	12	56	83	0	8	8	0.80
193799--193837	15	2.6	15	87	0	60	84	0	7	7	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194164--194203	2	20.0	2	100	0	80	50	0	0	50	1.00
194592--194640	21	2.3	21	82	6	64	48	0	0	51	1.00
195666--195713	24	2.0	24	95	0	87	39	12	16	31	1.86
200337--200372	7	4.9	7	90	10	54	16	2	0	80	0.83
200337--200372	15	2.4	15	90	9	56	16	2	0	80	0.83
200948--200985	19	2.1	18	90	5	58	50	2	2	44	1.30
201149--201176	3	9.3	3	100	0	56	67	0	0	32	0.91
201835--201874	21	2.0	20	85	5	53	42	5	2	50	1.37
204488--204520	2	16.5	2	100	0	66	51	0	0	48	1.00
205788--205818	14	2.2	14	94	0	53	64	0	9	25	1.24
206628--206677	26	2.0	24	88	7	73	36	12	6	46	1.66
209130--209164	18	1.9	18	100	0	70	20	0	5	74	1.02
209138--209177	11	3.3	12	89	6	55	25	0	2	72	0.97
209172--209201	14	2.2	13	94	5	51	50	0	0	50	1.00
209178--209245	20	3.5	20	73	23	58	54	0	4	41	1.20
210331--210554	110	2.0	111	93	2	380	46	12	8	32	1.72
213052--213101	20	2.5	20	87	9	66	26	12	0	62	1.30
215896--215924	14	2.0	15	93	6	51	68	0	6	24	1.13
218902--219102	110	1.8	110	93	0	348	20	8	23	47	1.77
219098--219134	2	18.5	2	100	0	74	48	0	0	51	1.00
219742--219822	42	1.9	42	94	0	144	32	16	12	39	1.85
220346--220456	55	2.0	55	92	0	186	27	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224257--224304	16	3.0	16	84	0	60	47	0	0	52	1.00
224282--224334	25	2.0	27	85	7	74	54	0	0	45	0.99
228004--228122	59	2.0	59	95	0	211	31	14	15	38	1.87
234343--234385	22	1.9	23	85	4	61	65	0	0	34	0.93
235183--235258	11	7.1	11	69	20	54	57	0	1	40	1.07
236663--236703	20	2.0	20	95	0	73	53	9	17	19	1.70
240648--240682	17	2.1	17	89	5	54	25	5	8	60	1.49
243323--243363	19	2.1	20	86	4	57	41	24	0	34	1.55
245288--245313	13	2.0	13	100	0	52	38	15	15	30	1.88
250979--251061	23	3.4	22	69	22	67	18	14	3	63	1.44
250957--251367	51	8.1	51	88	5	611	18	17	4	59	1.53
250960--251370	104	4.0	104	87	6	599	18	17	4	60	1.52
251785--251816	17	2.0	17	88	11	50	62	12	21	3	1.43
251913--252931	42	24.2	42	81	4	1097	37	19	28	13	1.90
261160--261208	19	2.4	19	80	13	53	44	4	20	30	1.70
266480--266892	51	8.1	51	92	4	692	18	17	3	59	1.52
270299--270351	13	4.5	13	73	26	64	37	16	13	32	1.88
270299--270367	33	2.1	33	91	5	113	37	18	13	30	1.89
270397--270451	19	2.8	19	91	2	83	36	16	16	30	1.91
270436--270462	13	2.1	13	100	0	54	40	14	14	29	1.86
271692--271798	52	2.1	52	94	0	187	53	8	13	25	1.67
276476--276517	16	2.6	17	77	11	52	33	7	7	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276521--276550	16	1.9	16	93	6	53	36	20	10	33	1.86
277596--277632	2	18.5	2	100	0	74	51	0	0	48	1.00
281689--281728	2	20.0	2	100	0	80	0	50	0	50	1.00
286679--286713	2	17.5	2	100	0	70	51	48	0	0	1.00
287508--287560	22	2.3	23	78	12	65	45	0	5	49	1.26
292795--292862	2	34.0	2	89	0	91	45	1	47	5	1.36
293434--293529	48	2.0	48	97	0	183	33	16	17	32	1.93
304668--304694	12	2.2	12	100	0	54	62	0	0	37	0.95
306072--306122	23	2.3	22	80	6	57	64	5	0	29	1.17
307399--307444	19	2.2	22	88	11	71	41	0	0	58	0.98
316037--316165	52	2.5	52	92	0	213	30	17	16	35	1.92
316037--316185	52	2.9	52	87	2	210	32	17	16	34	1.92
316174--316198	13	1.9	13	100	0	50	36	16	16	32	1.90
316237--316340	19	6.1	18	71	27	84	37	17	9	35	1.82
316260--316284	13	1.9	13	100	0	50	32	16	16	36	1.90
316240--316338	32	3.0	33	88	4	137	36	17	10	36	1.83
318517--318589	28	2.7	26	77	14	76	64	8	1	26	1.30
319514--319691	88	2.0	88	98	0	347	34	16	15	33	1.90
325863--325899	17	2.2	16	90	4	56	67	0	0	32	0.91
326905--326943	13	3.2	12	82	10	53	23	5	2	69	1.21
329050--329091	22	2.0	22	86	9	61	42	2	0	54	1.13
329050--329090	21	2.0	21	86	13	59	43	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330926--331017	34	2.7	34	79	3	105	35	6	2	55	1.38
331432--331461	9	3.3	9	100	0	60	66	0	0	33	0.92
333255--333334	39	2.1	39	85	4	108	45	13	7	33	1.72
340316--340347	16	2.0	17	88	11	50	40	0	3	56	1.15
348835--348886	26	2.1	26	86	10	74	38	0	3	57	1.17
348829--348876	21	2.2	21	85	7	60	35	0	6	58	1.23
349819--350444	79	7.9	79	76	7	509	35	13	23	27	1.92
349855--350413	237	2.4	236	80	5	619	35	13	23	27	1.92
350407--350471	28	2.3	28	78	5	69	38	23	18	20	1.93
350178--350660	264	1.8	264	83	3	641	36	13	23	27	1.92

Tables:   1   2   3   4   5