genome.fa.s327.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold327
Parameters: 2 7 7 80 10 50 1000
Length:  596179

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 484 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350327--350532	106	1.9	107	89	2	317	36	15	22	25	1.94
350434--350660	79	2.9	78	89	2	339	37	12	22	27	1.90
350248--350599	185	1.9	186	85	5	489	36	13	22	26	1.92
351908--351936	9	3.3	9	95	4	51	79	0	20	0	0.74
357992--358026	2	17.5	2	100	0	70	51	0	48	0	1.00
367576--367614	3	13.0	3	88	0	60	30	2	0	66	1.05
369004--369076	32	2.3	33	83	7	96	47	4	5	42	1.45
369592--369647	18	3.0	18	78	5	58	42	0	10	46	1.38
369583--369648	30	2.1	32	86	5	91	40	0	9	50	1.34
369594--369667	37	2.0	37	84	5	96	39	0	9	51	1.35
369559--369734	65	2.6	70	83	8	211	39	2	8	49	1.46
369760--369870	18	5.9	17	69	23	55	33	0	9	55	1.39
369958--370017	29	2.1	29	84	6	77	48	1	3	46	1.28
369953--370043	48	1.9	47	84	6	121	48	1	5	45	1.33
370310--370363	29	1.9	27	88	7	81	51	0	1	46	1.11
372844--372880	19	1.9	19	94	0	65	51	0	0	48	1.00
373070--373145	28	2.7	27	82	13	91	39	1	1	57	1.15
373944--373997	24	2.3	23	84	9	65	64	0	1	33	1.04
373951--374011	10	5.9	10	77	11	52	62	0	0	37	0.96
373953--374002	16	3.1	17	78	16	61	66	0	0	34	0.92
373934--374018	31	2.8	33	81	15	96	60	0	1	38	1.05
374628--374677	3	16.3	3	95	4	91	0	34	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389701--389838	32	4.2	33	72	18	99	45	1	3	49	1.28
392590--392653	16	3.9	15	79	20	58	45	1	1	51	1.20
393763--393820	17	3.3	18	81	11	57	43	3	6	46	1.47
393769--393819	19	2.8	19	82	11	63	41	3	7	47	1.51
397365--397395	16	1.9	16	93	0	53	48	0	3	48	1.17
398873--398921	23	2.2	21	82	13	55	69	8	2	20	1.24
399612--399690	33	2.4	33	86	0	113	48	8	7	35	1.63
401222--401281	24	2.3	26	81	18	81	68	0	5	26	1.10
401218--401287	24	3.0	22	78	13	79	64	0	5	30	1.17
404082--404144	22	2.9	21	77	11	65	41	0	1	57	1.08
405156--405420	45	5.8	45	85	3	359	38	3	4	52	1.41
405156--405420	137	1.9	137	88	1	397	38	3	4	52	1.41
405156--405429	92	3.0	92	91	2	424	37	3	4	53	1.40
405807--406431	327	1.9	326	89	2	968	30	13	14	41	1.85
406529--406597	31	2.2	30	82	7	84	36	10	15	37	1.82
408679--408771	45	2.0	46	89	2	143	35	3	5	55	1.39
409634--409673	21	1.9	21	85	10	55	40	5	22	32	1.76
410293--410326	2	17.5	2	87	6	52	44	0	2	52	1.16
410344--410404	24	2.4	23	81	10	59	34	11	3	50	1.55
410359--410407	24	2.0	24	96	0	89	30	12	4	53	1.57
410738--410776	20	1.9	20	89	5	60	61	5	5	28	1.39
410865--410933	28	2.4	28	83	7	86	66	8	1	23	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412172--412222	2	25.5	2	100	0	102	50	0	0	49	1.00
413761--413803	22	2.0	23	86	9	63	44	9	0	46	1.35
413868--413929	20	3.0	20	72	9	54	45	0	1	53	1.10
414269--414311	19	2.3	19	79	0	50	83	4	11	0	0.78
415761--415814	11	4.9	11	78	17	51	70	0	0	29	0.88
415773--415888	22	5.2	23	73	11	73	59	0	0	40	0.97
415776--415872	41	2.4	38	78	17	99	59	0	0	40	0.97
415762--415876	17	6.4	20	70	21	69	60	0	0	40	0.97
418355--418420	15	4.7	15	70	19	52	53	0	1	45	1.09
418931--418984	13	4.6	12	75	24	53	66	1	0	31	1.02
427400--427556	79	2.0	79	93	0	269	50	8	17	22	1.73
430864--431045	78	2.3	79	84	4	244	32	15	25	26	1.95
431172--431243	28	2.5	30	84	8	89	29	22	26	22	1.99
433811--433865	20	2.8	20	97	0	101	43	14	16	25	1.86
434711--434832	61	2.0	61	85	4	167	28	19	28	22	1.98
434998--435163	42	3.8	44	77	12	148	39	13	26	19	1.90
435171--435309	60	2.3	61	87	5	201	29	20	24	25	1.99
435225--435517	100	2.9	100	91	1	471	29	18	28	24	1.98
441578--441723	77	1.9	79	86	2	215	33	13	24	28	1.93
441692--441859	51	3.3	51	81	3	185	34	12	25	27	1.92
441578--441760	78	2.4	77	81	7	192	32	14	25	27	1.94
441988--442146	51	3.1	51	83	1	158	33	11	24	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442128--442164	18	2.1	18	89	0	56	45	5	24	24	1.74
442076--442215	69	2.0	69	90	2	219	38	10	22	27	1.88
442142--442273	51	2.6	50	82	2	147	34	12	25	28	1.92
444574--444624	20	2.5	20	87	6	68	43	11	17	27	1.84
444654--444710	20	2.8	20	94	0	105	43	15	15	24	1.86
444647--444672	13	2.0	13	100	0	52	38	15	15	30	1.88
446504--446554	21	2.3	22	83	6	59	72	0	19	7	1.08
453078--453161	26	3.5	24	76	14	93	77	0	19	3	0.91
453078--453130	20	2.7	21	80	11	67	75	0	20	3	0.96
453078--453163	21	4.2	21	75	10	72	76	0	19	3	0.92
453104--453139	17	2.1	17	89	0	54	77	0	19	2	0.88
453078--453163	25	3.6	24	73	17	81	76	0	19	3	0.92
453475--453521	19	2.4	20	79	13	53	25	4	6	63	1.36
453830--453859	13	2.3	13	94	0	51	26	16	16	40	1.90
453875--453968	20	4.7	20	89	5	120	29	15	11	42	1.83
454291--454393	36	3.2	36	60	28	84	26	25	19	29	1.99
454291--457011	55	47.9	55	86	7	3213	27	29	19	23	1.98
454653--454735	27	3.0	27	60	16	62	28	30	19	21	1.98
454818--454900	27	3.0	27	60	16	62	28	30	19	21	1.98
454259--457011	231	12.1	227	84	9	3320	27	29	19	23	1.98
455072--455162	29	3.2	29	65	20	84	27	29	18	24	1.98
455798--455937	27	5.1	27	59	16	63	28	30	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457804--457871	19	3.9	19	78	21	85	35	11	14	38	1.83
457806--457868	32	2.0	32	96	0	117	34	12	15	36	1.86
457825--457849	13	1.9	13	100	0	50	36	16	16	32	1.90
457911--457936	13	2.0	13	100	0	52	30	15	15	38	1.88
457891--457957	33	2.0	33	88	0	98	25	14	16	43	1.86
460476--460645	52	3.3	51	76	11	175	30	24	10	34	1.89
460625--460706	28	2.9	28	83	7	96	24	32	17	25	1.96
460309--460698	211	1.8	211	89	3	606	29	26	12	31	1.93
463928--464146	51	4.3	51	90	3	334	30	26	10	31	1.91
463914--464146	101	2.3	102	91	1	371	30	26	10	33	1.90
464126--464202	28	2.8	28	88	7	104	22	31	19	27	1.98
464235--464311	28	2.7	29	80	9	88	19	32	22	25	1.97
464117--464395	109	2.5	110	88	7	413	23	25	17	33	1.96
464263--464531	79	3.3	80	82	6	285	25	25	15	33	1.95
465857--465885	15	1.9	15	100	0	58	55	0	0	44	0.99
466260--466298	20	2.1	17	86	13	51	66	0	2	30	1.05
466388--466425	12	3.1	12	85	14	51	55	0	0	44	0.99
467169--467204	17	2.0	19	89	10	58	61	2	2	33	1.25
467290--467404	50	2.3	50	78	6	124	42	13	2	41	1.57
467858--467896	15	2.5	15	88	12	53	28	0	0	71	0.86
469419--469709	152	1.9	150	83	7	374	40	15	14	29	1.87
470400--470570	92	1.9	92	98	0	333	46	19	7	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470861--470998	37	3.5	36	68	18	105	6	24	31	36	1.81
470889--470948	22	2.7	22	84	2	66	6	26	33	33	1.83
470775--471226	82	5.6	82	90	1	671	7	23	31	37	1.83
470980--471045	23	2.9	22	84	6	87	4	21	39	34	1.74
471134--471203	22	3.1	22	79	4	68	5	22	35	35	1.78
471144--471198	23	2.5	22	87	3	74	7	21	38	32	1.81
471646--471712	31	2.2	31	88	0	98	17	20	19	41	1.90
471780--471819	20	2.0	21	85	5	55	17	5	2	75	1.10
472317--473802	43	35.1	43	82	3	1527	38	18	28	14	1.90
472317--473802	85	17.6	85	80	5	1476	38	18	28	14	1.90

Tables:   1   2   3   4   5