genome.fa.s328.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold328
Parameters: 2 7 7 80 10 50 1000
Length:  936272

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 607 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567911--567951	17	2.4	18	84	11	52	0	19	0	80	0.71
567956--568026	2	35.5	2	100	0	142	0	49	0	50	1.00
568026--568064	2	19.5	2	100	0	78	48	0	0	51	1.00
572255--572296	21	2.0	22	85	4	59	16	23	7	52	1.68
572783--572829	23	2.0	23	95	0	85	65	10	4	19	1.39
573607--573675	33	2.0	33	83	11	84	62	2	7	27	1.36
573782--573821	10	3.9	10	90	6	62	0	15	0	85	0.61
573744--573806	18	3.3	18	72	14	56	3	14	1	80	0.90
573744--573821	21	3.4	21	77	18	66	2	16	1	79	0.91
575529--575568	21	1.9	21	85	10	55	40	10	5	45	1.60
576087--576120	18	1.9	17	88	5	50	50	2	2	44	1.32
577260--577344	12	7.1	11	74	12	62	2	22	0	75	0.92
577258--577342	24	3.5	23	73	10	80	2	21	0	76	0.90
577257--577319	19	3.4	18	76	10	56	1	22	0	76	0.88
577292--577323	15	2.2	15	94	5	57	0	28	0	71	0.86
578826--578874	15	3.4	14	72	10	53	36	0	4	59	1.17
578918--578955	17	2.2	17	90	0	58	42	5	5	47	1.48
579952--579991	16	2.4	17	88	12	57	62	0	0	37	0.95
579936--580025	27	3.2	28	75	18	82	60	2	4	33	1.29
582172--582235	21	2.9	22	77	11	60	59	1	0	39	1.07
583437--583480	15	3.0	15	78	15	56	54	0	0	45	0.99
584003--584038	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585903--586014	56	2.0	56	100	0	224	39	12	23	25	1.89
589763--589878	51	2.2	52	89	1	180	31	14	11	43	1.81
589763--589901	51	2.7	51	85	3	154	30	14	10	43	1.79
591112--591216	52	2.0	52	90	0	165	26	13	23	36	1.92
592420--592792	190	2.0	190	89	2	570	28	21	12	36	1.90
593930--594027	31	3.1	31	80	8	110	45	5	9	39	1.58
595613--595662	16	3.1	16	80	5	57	22	2	22	54	1.55
600917--600943	13	2.1	13	100	0	54	29	14	14	40	1.86
600898--600962	32	2.0	32	90	3	103	27	18	15	38	1.91
600927--600983	19	2.9	19	89	2	87	31	17	17	33	1.93
601033--601081	13	4.2	13	70	24	54	34	12	16	36	1.86
606015--606065	20	2.5	20	80	0	57	35	21	7	35	1.83
606946--607007	22	2.8	22	76	9	63	64	4	4	25	1.34
607652--607707	28	2.0	28	86	6	78	66	7	1	25	1.27
607818--607864	22	2.3	22	82	10	64	36	4	4	55	1.39
607984--608023	21	1.9	21	84	0	53	55	0	0	45	0.99
609003--609046	21	2.1	21	86	0	61	38	0	0	61	0.96
609198--609249	21	2.5	20	75	12	50	55	1	5	36	1.35
609568--609596	11	2.7	11	94	5	51	34	0	0	65	0.93
609678--609722	22	2.0	22	83	8	56	53	0	0	46	1.00
609685--609751	20	3.2	21	79	6	57	53	1	0	44	1.09
609745--609793	18	2.6	19	75	18	57	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609840--609926	17	5.6	16	70	22	60	58	0	0	41	0.98
609861--609942	5	17.8	5	75	17	72	58	1	0	40	1.06
609856--609940	39	2.1	41	86	4	120	58	1	0	40	1.05
609860--609942	9	9.1	9	76	18	75	57	1	0	40	1.06
611175--611201	1	27.0	1	100	0	54	0	0	0	100	0.00
618095--618141	19	2.3	19	82	10	58	55	0	0	44	0.99
618416--618443	2	14.0	2	100	0	56	0	50	0	50	1.00
619149--619186	15	2.6	15	83	4	51	52	0	0	47	1.00
622184--622547	178	2.0	179	95	1	658	27	14	14	43	1.85
627501--627574	4	19.0	4	77	13	57	75	0	21	2	0.92
630325--630397	34	2.1	35	85	7	96	53	12	16	17	1.73
630648--630700	20	2.7	20	96	0	97	32	13	13	41	1.82
630769--630823	19	2.9	19	94	0	92	40	14	14	30	1.86
630806--630832	13	2.1	13	100	0	54	40	14	14	29	1.86
632391--632415	13	1.9	13	100	0	50	36	16	16	32	1.90
632368--632435	33	2.1	32	88	2	100	35	14	14	35	1.87
632489--632551	20	3.5	20	72	28	77	34	19	15	30	1.93
632507--632531	13	1.9	13	100	0	50	36	16	16	32	1.90
632489--632552	33	1.9	33	100	0	128	35	18	15	29	1.92
634978--635016	13	3.0	13	92	0	69	33	15	20	30	1.94
641180--641204	13	1.9	13	100	0	50	36	16	16	32	1.90
641157--641224	33	2.1	33	88	2	102	32	14	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641256--641307	20	2.5	21	84	3	70	26	17	15	40	1.89
641295--641360	20	3.7	20	73	26	83	34	19	15	30	1.93
641316--641340	13	1.9	13	100	0	50	36	16	16	32	1.90
641296--641361	33	2.0	33	100	0	132	36	18	15	30	1.91
643424--643488	34	1.9	33	87	3	94	40	12	20	27	1.88
648033--648059	12	2.2	12	100	0	54	22	33	0	44	1.53
649315--649387	34	2.1	35	82	7	87	52	13	16	17	1.75
649679--649709	13	2.4	13	94	0	53	38	9	16	35	1.81
649753--649800	19	2.5	19	93	0	78	39	14	14	31	1.86
652395--652438	2	22.0	2	85	0	61	45	2	4	47	1.35
653988--654054	16	4.2	17	76	17	72	55	0	0	44	0.99
661333--661373	21	2.0	20	86	9	57	39	0	0	60	0.96
661848--661930	40	2.0	42	81	11	100	46	3	0	49	1.19
662020--662072	22	2.3	23	81	12	74	58	0	0	41	0.98
662049--662082	13	2.5	14	90	4	52	58	0	0	41	0.98
662475--662511	15	2.5	15	91	4	58	59	0	0	40	0.97
662469--662531	26	2.5	25	84	5	83	60	0	0	39	0.97
662547--662626	16	5.2	15	69	20	58	56	0	1	42	1.07
662547--662626	31	2.6	31	75	15	85	56	0	1	42	1.07
664524--665009	257	1.9	255	81	5	595	35	17	13	33	1.89
666232--666258	14	1.9	14	100	0	54	51	7	7	33	1.58
666627--666670	20	2.4	18	81	11	54	59	4	4	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668654--668698	12	3.9	12	75	21	51	46	0	2	51	1.13
669064--669105	21	2.0	21	90	9	68	40	0	2	57	1.12
668960--669147	64	2.9	63	74	11	166	48	2	1	46	1.25
669107--669182	34	2.2	35	81	9	86	52	2	0	44	1.14
669141--669178	19	2.0	19	89	0	58	47	2	0	50	1.15
675377--675413	16	2.2	17	90	4	58	37	0	0	62	0.96
681344--681397	20	2.7	20	85	5	74	37	16	12	33	1.87
681716--681741	13	2.0	13	100	0	52	30	15	15	38	1.88
683373--683408	3	12.0	3	87	0	54	38	0	30	30	1.58
687561--687610	22	2.2	23	89	3	75	58	0	2	40	1.10
690395--690438	23	1.9	23	85	0	61	31	0	2	65	1.05
690441--690498	26	2.2	26	79	11	66	46	0	1	51	1.11
690783--690831	21	2.3	22	89	6	75	40	6	0	53	1.26
692415--692459	5	8.2	6	83	16	62	31	0	0	68	0.89
692415--692458	11	4.1	11	86	13	65	31	0	0	68	0.90
692415--692458	16	2.7	16	85	3	61	31	0	0	68	0.90
692410--692459	11	4.4	11	79	20	50	32	0	0	68	0.90
694007--694045	21	1.9	19	85	10	51	51	2	0	46	1.14
694090--694157	26	2.4	27	83	11	84	42	5	2	48	1.42
695047--695083	19	2.0	19	89	5	58	48	5	0	45	1.25
705380--705435	20	2.7	21	88	5	78	28	16	12	42	1.84
707768--708132	79	4.6	79	76	9	307	28	23	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707803--708133	158	2.1	158	80	6	375	28	24	12	34	1.92
714943--714977	17	2.1	17	89	10	54	51	0	2	45	1.16
716977--717021	2	22.5	2	95	0	81	2	46	0	51	1.13
719083--719109	2	13.5	2	100	0	54	48	0	0	51	1.00
721197--721225	2	14.5	2	100	0	58	48	0	0	51	1.00
723304--723363	21	2.9	21	87	5	86	33	21	5	40	1.75
726617--726673	20	2.8	20	82	10	71	33	22	3	40	1.71
734863--734990	52	2.5	52	93	3	215	31	17	17	33	1.93
734863--735010	52	2.9	50	85	12	185	32	17	17	32	1.94
734999--735023	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6