genome.fa.s334.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold334
Parameters: 2 7 7 80 10 50 1000
Length:  475332

Tables:   1   2   3   

This is table  3  of  3  ( 336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364205--364298	20	4.7	20	90	2	145	40	14	18	26	1.89
364189--364298	40	2.8	40	84	5	150	40	14	16	28	1.87
365177--365224	24	2.0	24	91	0	78	27	10	6	56	1.57
370524--370566	2	21.5	2	95	0	77	51	2	46	0	1.13
374040--374081	2	21.5	2	81	13	52	50	2	0	47	1.14
376202--376262	32	1.9	32	93	0	104	26	24	11	37	1.89
376726--376818	36	2.8	33	84	9	111	32	13	21	32	1.93
380149--380264	20	5.8	20	74	8	76	35	5	9	50	1.57
380215--380389	21	8.4	20	72	12	104	35	9	5	49	1.58
380229--380389	64	2.5	63	76	12	168	34	9	6	49	1.60
380445--380609	21	7.9	22	73	15	120	35	6	8	49	1.60
380445--380618	42	4.2	41	76	12	133	35	6	9	48	1.62
380441--380609	63	2.7	61	77	12	166	36	6	8	49	1.59
380573--380670	51	1.9	52	85	6	137	34	6	12	46	1.66
380613--380974	21	17.1	21	68	10	157	32	6	11	48	1.66
380856--380905	10	4.7	11	73	9	50	40	4	2	54	1.31
380858--380951	47	2.0	46	87	6	136	39	4	3	53	1.37
381053--381105	20	2.6	20	84	3	70	45	3	3	47	1.39
381053--381264	21	10.1	21	70	8	128	39	5	8	46	1.58
381324--381696	21	17.3	22	69	15	121	35	6	10	47	1.64
381575--381657	43	2.0	42	85	7	114	34	6	8	50	1.57
381668--381708	21	2.0	21	85	9	57	41	4	9	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381855--381906	22	2.5	21	78	9	61	40	7	7	44	1.62
381861--381912	22	2.5	21	84	6	61	38	9	7	44	1.66
381853--381912	21	2.9	21	78	7	68	40	8	8	43	1.65
381855--381964	20	5.3	21	79	6	80	36	5	6	51	1.50
381901--381964	21	3.1	21	84	4	85	32	3	4	59	1.34
382163--382201	2	19.5	2	100	0	78	48	0	0	51	1.00
384715--384805	26	3.5	26	77	15	73	47	1	0	51	1.07
384798--384839	17	2.5	17	88	7	59	54	4	0	40	1.21
384814--384866	17	3.0	17	78	10	52	60	3	0	35	1.15
388051--388108	23	2.4	23	80	13	64	53	0	0	46	1.00
388066--388107	22	1.9	22	90	9	68	54	0	0	45	0.99
400351--400428	40	2.0	40	94	5	140	39	14	7	38	1.74
404293--404321	12	2.4	12	100	0	58	41	24	10	24	1.86
405391--405431	13	3.2	13	100	0	82	39	17	14	29	1.89
405484--405544	19	3.5	19	75	25	80	36	19	11	32	1.88
405469--405546	32	2.4	32	95	0	138	34	17	12	34	1.88
410222--410273	23	2.3	23	96	3	97	32	15	17	34	1.91
412639--412687	25	2.0	25	88	4	73	61	0	0	38	0.96
412654--412718	17	4.0	16	74	23	64	53	1	0	44	1.09
412634--412710	31	2.4	32	79	14	88	59	1	0	38	1.06
412638--412720	31	2.7	30	80	10	87	56	1	0	42	1.07
412650--412724	25	3.0	25	81	11	84	52	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413123--413151	3	9.7	3	100	0	58	68	0	0	31	0.89
413436--413478	13	3.2	13	77	6	50	58	6	2	32	1.38
413854--413895	22	2.0	22	85	4	59	21	9	0	69	1.17
414096--414134	2	19.5	2	100	0	78	48	0	0	51	1.00
414670--414749	30	2.7	30	80	3	90	48	2	11	37	1.52
416177--416262	30	3.0	29	70	14	88	45	2	2	50	1.27
416167--416262	27	3.5	28	69	10	81	45	2	3	48	1.29
419558--419629	32	2.2	32	87	0	108	48	2	2	45	1.31
420554--420588	17	2.0	18	88	5	54	48	0	0	51	1.00
421255--421296	17	2.5	17	88	3	59	78	2	0	19	0.86
421249--421296	16	2.9	16	79	14	62	75	2	0	22	0.91
421399--421428	2	15.5	2	93	6	53	53	0	46	0	1.00
423793--423817	2	12.5	2	100	0	50	48	0	0	52	1.00
423817--423844	2	14.0	2	100	0	56	0	0	50	50	1.00
424257--424308	16	3.3	16	74	12	54	34	0	1	63	1.06
424534--424594	16	3.8	16	79	14	56	31	0	8	60	1.26
424628--424699	22	3.3	21	73	7	54	26	9	20	43	1.83
426235--426473	124	1.9	123	82	5	293	40	7	7	45	1.59
426637--426679	20	2.2	20	83	8	52	48	4	4	41	1.44
426683--426725	15	2.8	16	79	10	54	48	0	0	51	1.00
434404--434519	52	2.3	49	82	8	126	40	13	14	31	1.85
436918--436971	14	3.8	14	74	13	56	79	0	18	1	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436939--436971	17	1.9	17	88	11	50	87	0	12	0	0.53
442406--442696	30	9.7	29	76	10	189	28	29	16	25	1.96
442526--442600	35	2.2	35	85	2	107	22	33	9	34	1.86
442463--442617	35	4.8	35	75	12	102	23	31	14	30	1.94
442591--442742	28	5.3	28	85	5	182	36	27	16	19	1.93
442400--442742	56	5.8	58	72	14	220	30	29	15	24	1.95
442859--442999	52	2.7	52	91	0	228	21	26	19	32	1.97
443813--443837	13	1.9	13	100	0	50	36	16	16	32	1.90
443793--443859	33	2.0	33	88	0	98	32	11	14	40	1.83
443900--443924	13	1.9	13	100	0	50	32	16	16	36	1.90
443913--444061	52	2.9	50	87	6	208	34	18	16	30	1.93
449619--451379	28	62.0	28	76	11	878	28	29	16	24	1.97
449635--449968	27	12.1	27	85	3	391	25	32	14	28	1.94
449635--449968	55	6.1	55	85	3	422	25	32	14	28	1.94
449654--451379	56	30.9	57	84	6	1688	28	30	17	24	1.97
451983--452027	23	2.0	23	86	8	65	80	6	11	2	0.99
452698--452743	16	2.5	19	83	13	53	78	0	19	2	0.86
457701--457980	79	3.6	78	79	9	284	33	15	23	27	1.95
460407--460462	20	2.8	20	97	0	103	44	14	14	26	1.83
460396--460425	13	2.3	13	94	0	51	40	10	16	33	1.82
462344--462393	1	50.0	1	93	0	73	94	0	2	4	0.38
462398--462454	21	2.7	21	97	0	105	33	10	19	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462510--462577	19	3.9	19	78	21	85	35	11	14	38	1.83
462531--462555	13	1.9	13	100	0	50	36	16	16	32	1.90
462512--462574	32	2.0	32	96	0	117	34	12	15	36	1.86
462617--462642	13	2.0	13	100	0	52	30	15	15	38	1.88
462597--462663	33	2.0	33	88	0	98	25	14	16	43	1.86
465121--465193	27	2.7	27	86	2	92	23	32	21	21	1.98
465176--465346	51	3.3	51	80	4	207	29	26	11	32	1.91
465334--465410	28	2.8	27	82	7	93	24	32	15	27	1.95

Tables:   1   2   3

The End!