genome.fa.s341.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold341
Parameters: 2 7 7 80 10 50 1000
Length:  1349338

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1050 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935505--936145	165	3.8	165	80	8	623	26	26	21	24	2.00
935505--936148	55	11.3	59	77	12	516	26	26	22	25	2.00
936244--936337	42	2.3	40	81	7	100	19	29	10	40	1.85
937020--937044	13	1.9	13	100	0	50	36	16	16	32	1.90
940694--940719	13	2.0	13	100	0	52	30	15	15	38	1.88
940674--940737	32	2.0	33	87	3	94	28	14	17	40	1.88
943667--944009	51	6.6	51	69	11	192	29	26	12	31	1.92
943731--943807	28	2.8	28	86	4	93	23	33	19	23	1.97
943790--944010	51	4.3	51	81	5	230	29	26	11	32	1.92
944024--944204	79	2.3	79	84	0	227	25	25	15	33	1.95
947174--947199	13	2.0	13	100	0	52	53	15	0	30	1.42
950836--950867	9	3.6	9	95	0	55	50	0	0	50	1.00
950826--950919	39	2.3	41	83	7	113	43	0	0	56	0.99
950866--950928	17	3.7	18	72	27	57	42	0	1	55	1.09
952101--952148	2	24.5	2	95	4	89	50	0	0	50	1.00
952855--952890	3	12.0	3	100	0	72	33	0	0	66	0.92
953421--953461	20	2.0	20	86	9	57	58	0	2	39	1.11
953728--953753	8	3.2	8	100	0	52	57	0	0	42	0.98
954458--954503	18	2.5	19	82	3	58	54	0	0	45	0.99
954499--954573	28	2.7	30	74	14	79	56	0	0	44	0.99
956551--956606	21	2.6	22	94	5	105	37	10	25	26	1.88
956594--956624	10	3.1	10	90	0	53	41	6	29	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956648--956684	19	2.0	19	94	5	67	27	10	16	45	1.80
956648--956784	53	2.6	53	92	1	229	27	17	17	37	1.92
956772--956826	21	2.7	20	80	5	65	30	14	16	38	1.89
962089--962133	21	2.1	21	84	8	56	53	4	20	22	1.63
963937--963975	15	2.6	15	91	0	60	51	15	20	12	1.76
966046--966071	13	2.0	13	100	0	52	30	15	15	38	1.88
970781--970893	38	3.0	38	84	2	138	31	18	21	28	1.97
970864--970987	31	4.0	31	83	0	131	31	22	17	28	1.97
974634--974701	26	2.6	26	75	9	66	42	1	1	54	1.18
974678--974721	19	2.4	19	84	3	54	52	0	0	47	1.00
974759--974798	21	1.9	21	85	10	55	47	5	2	45	1.38
975025--975104	32	2.3	35	85	10	103	65	0	0	35	0.93
975025--975115	37	2.6	32	83	13	101	63	0	0	36	0.94
975036--975136	28	3.7	26	68	20	53	62	0	0	37	0.96
979309--979436	51	2.5	50	83	8	150	35	14	22	26	1.93
979368--980145	79	9.8	79	90	0	1225	32	13	25	27	1.94
980079--980515	104	4.2	103	72	9	309	32	12	26	28	1.92
980072--980515	155	2.9	153	75	10	443	33	11	26	28	1.92
980336--980417	28	2.9	28	85	1	92	24	18	34	23	1.96
980079--980515	51	8.5	51	74	10	345	32	12	26	28	1.92
981466--981567	43	2.4	43	94	0	177	7	22	37	32	1.83
981440--981515	18	4.2	18	74	14	66	9	25	35	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981466--981594	43	3.0	43	84	4	127	10	24	35	29	1.88
981908--982061	26	6.0	26	96	0	283	11	28	7	51	1.66
982093--982131	4	9.5	4	88	5	60	23	0	0	76	0.78
982775--982868	42	2.2	41	80	10	100	43	10	24	21	1.84
982848--983242	55	7.0	55	84	8	497	25	21	26	26	2.00
982848--983269	116	3.6	114	87	7	568	25	21	26	26	2.00
983095--983180	27	3.1	27	63	3	73	27	20	24	26	1.99
989362--989476	51	2.2	52	83	7	137	34	13	21	29	1.92
989408--990266	79	10.9	79	93	0	1423	31	14	26	27	1.95
990192--990634	155	2.9	152	74	11	416	32	11	26	28	1.92
990480--990536	28	2.0	29	89	3	89	29	15	29	24	1.96
990200--990644	51	8.6	49	73	13	281	32	11	26	29	1.92
991583--991622	19	2.2	19	86	4	55	10	22	42	25	1.84
991585--991680	43	2.2	43	94	0	165	8	21	37	32	1.84
991559--991634	18	4.2	18	74	14	66	7	25	36	30	1.84
992042--992114	26	2.8	26	97	0	137	10	28	8	52	1.65
992137--992179	18	2.4	17	88	11	68	18	0	0	81	0.69
992140--992171	14	2.2	15	94	5	57	21	0	0	78	0.76
992348--992379	12	2.6	13	90	9	50	71	0	0	28	0.86
994656--994701	20	2.3	20	84	0	56	32	4	52	10	1.56
994748--994817	24	2.8	24	77	14	70	45	22	10	21	1.81
994750--994846	27	3.7	27	80	4	101	45	23	9	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994834--994891	26	2.3	25	88	5	82	25	13	25	34	1.93
996755--996800	21	2.1	22	88	4	67	19	28	19	32	1.96
999253--999298	20	2.3	20	84	0	56	32	4	52	10	1.56
999345--999414	24	2.8	24	77	14	70	45	22	10	21	1.81
999347--999443	27	3.7	27	80	4	101	45	23	9	21	1.81
999431--999488	26	2.3	25	88	5	82	25	13	25	34	1.93
1001132--1001165	12	2.8	12	81	0	50	67	0	5	26	1.13
1004756--1004783	4	7.0	4	100	0	56	75	0	0	25	0.81
1005339--1005375	15	2.3	16	90	9	58	81	2	0	16	0.81
1007319--1007350	15	2.1	15	100	0	64	37	12	18	31	1.88
1007322--1007358	15	2.4	15	90	4	56	35	13	16	35	1.88
1014448--1015731	28	46.5	28	84	5	1233	25	29	15	29	1.96
1014457--1015471	330	3.1	329	87	3	1398	25	29	14	30	1.95
1014538--1016017	84	17.8	84	79	7	667	26	29	15	28	1.96
1015035--1015951	169	5.5	167	80	5	615	26	28	16	28	1.97
1015040--1016017	28	35.1	28	82	5	640	27	28	16	27	1.97
1015988--1016072	32	2.7	32	81	5	93	24	28	18	28	1.98
1016801--1016840	20	2.0	20	100	0	80	25	15	15	45	1.84
1016863--1016940	20	3.9	20	79	0	84	33	12	12	41	1.82
1021103--1021143	20	2.0	20	100	0	82	56	14	4	24	1.58
1021331--1021378	14	3.5	14	88	2	71	52	6	4	37	1.46
1022483--1022545	29	2.2	30	80	11	78	22	15	3	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023236--1023286	19	2.6	20	90	3	77	29	17	13	39	1.88
1023861--1023918	20	3.0	20	84	2	73	29	10	13	46	1.77
1023990--1024110	52	2.3	52	94	0	206	36	18	16	28	1.92
1027405--1027448	23	1.9	23	86	9	63	29	6	22	40	1.80
1031649--1031703	18	3.3	18	63	31	50	27	20	10	41	1.85
1031642--1031703	31	2.0	31	100	0	124	25	19	9	45	1.81
1032338--1032432	47	2.0	47	91	2	156	33	10	14	41	1.81
1034627--1034681	20	2.8	20	91	2	94	29	14	14	41	1.85
1034726--1034751	13	2.0	13	100	0	52	30	15	15	38	1.88
1034710--1034772	33	1.9	33	83	6	83	34	12	19	33	1.89
1039410--1039455	2	23.5	2	84	4	58	50	0	2	47	1.13
1039412--1039464	23	2.2	24	93	3	90	49	0	3	47	1.19
1040475--1040499	13	1.9	13	100	0	50	32	16	16	36	1.90
1040549--1040604	19	2.9	19	86	2	76	37	16	16	30	1.90
1041190--1041281	37	2.4	38	90	5	141	42	20	2	34	1.64
1047635--1047668	3	11.3	3	87	0	50	32	29	0	38	1.58
1049257--1049322	20	3.7	20	67	26	65	31	21	12	34	1.90
1049276--1049335	13	5.2	12	71	20	56	31	20	13	35	1.91
1049258--1049336	33	2.4	33	97	0	149	31	20	12	35	1.90
1049258--1049355	33	3.0	32	89	5	108	32	20	12	34	1.90
1049387--1049439	19	2.7	20	85	5	72	39	15	13	32	1.85
1055825--1055876	22	2.5	20	75	21	54	26	0	5	67	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057141--1057189	14	2.9	17	85	14	59	32	2	0	65	1.04
1057598--1057644	24	1.9	25	91	4	78	51	0	0	48	1.00
1057598--1057644	25	1.9	24	87	12	69	51	0	0	48	1.00
1057838--1057901	10	6.5	10	74	16	62	42	0	1	56	1.09
1057834--1057903	19	3.7	19	78	12	81	40	0	1	58	1.07
1057834--1057901	29	2.4	29	83	9	86	41	0	1	57	1.08
1061840--1061897	23	2.5	23	72	13	55	44	0	0	55	0.99
1061927--1061965	2	19.5	2	84	10	53	51	0	2	46	1.14
1062091--1062180	32	2.8	32	72	3	83	43	1	1	54	1.14
1062091--1062183	48	1.9	48	81	12	111	43	1	1	54	1.14

Tables:   1   2   3   4   5   6   7   8   9